RNA–Protein interactions for RNA: snR49

snR49, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR49, Length 165 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR49	snR49	TIM22	Q12328	207 aa		0.27	□□□□□ -2.37
snR49	snR49	YOR012W	Q12351	137 aa		0.27	□□□□□ -2.37
snR49	snR49	TY3A-I	Q99219	290 aa		0.27	□□□□□ -2.37
snR49	snR49	YOL163W	P0CF20	169 aa		0.26	□□□□□ -2.37
snR49	snR49	DAP2	P18962	818 aa		0.26	□□□□□ -2.37
snR49	snR49	SCO1	P23833	295 aa		0.26	□□□□□ -2.37
snR49	snR49	YHR177W	P38867	453 aa		0.26	□□□□□ -2.37
snR49	snR49	DSE1	P40077	573 aa		0.26	□□□□□ -2.37
snR49	snR49	SDS23	P53172	527 aa		0.26	□□□□□ -2.37
snR49	snR49	AQR1	P53943	586 aa		0.26	□□□□□ -2.37
snR49	snR49	CPR2	P23285	205 aa		0.25	□□□□□ -2.37
snR49	snR49	PCH2	P38126	564 aa		0.25	□□□□□ -2.37
snR49	snR49	YHR182W	P38870	785 aa		0.25	□□□□□ -2.37
snR49	snR49	LSM5	P40089	93 aa	Known RBP	0.25	□□□□□ -2.37
snR49	snR49	EPL1	P43572	832 aa		0.25	□□□□□ -2.37
snR49	snR49	TPC1	P53257	314 aa		0.25	□□□□□ -2.37
snR49	snR49	RRB1	Q04225	511 aa	Known RBP	0.25	□□□□□ -2.37
snR49	snR49	SUE1	Q06524	206 aa		0.25	□□□□□ -2.37
snR49	snR49	UAF30	Q08747	228 aa		0.25	□□□□□ -2.37
snR49	snR49	SFI1	Q12369	946 aa		0.25	□□□□□ -2.37
snR49	snR49	DCP1	Q12517	231 aa	Predicted RBP	0.25	□□□□□ -2.37
snR49	snR49	RPL26A	P05743	127 aa	Known RBP	0.24	□□□□□ -2.37
snR49	snR49	ADK2	P26364	225 aa		0.24	□□□□□ -2.37
snR49	snR49	CSE1	P33307	960 aa		0.24	□□□□□ -2.37
snR49	snR49	LCB2	P40970	561 aa		0.24	□□□□□ -2.37
snR49	snR49	TCB2	P48231	1178 aa		0.24	□□□□□ -2.37
snR49	snR49	RPL26B	P53221	127 aa	Known RBP	0.24	□□□□□ -2.37
snR49	snR49	NDL1	Q06568	189 aa		0.24	□□□□□ -2.37
snR49	snR49	RRI2	Q12348	645 aa		0.24	□□□□□ -2.37
snR49	snR49	TRM10	Q12400	293 aa		0.24	□□□□□ -2.37
snR49	snR49	PDE2	P06776	526 aa		0.23	□□□□□ -2.37
snR49	snR49	YAK1	P14680	807 aa		0.23	□□□□□ -2.37
snR49	snR49	NFU1	P32860	256 aa		0.23	□□□□□ -2.37
snR49	snR49	VAM7	P32912	316 aa		0.23	□□□□□ -2.37
snR49	snR49	YKL187C	P34231	750 aa		0.23	□□□□□ -2.37
snR49	snR49	MNL1	P38888	796 aa		0.23	□□□□□ -2.37
snR49	snR49	NUP57	P48837	541 aa		0.23	□□□□□ -2.37
snR49	snR49	UFD1	P53044	361 aa		0.23	□□□□□ -2.37
snR49	snR49	YDR541C	Q03049	344 aa		0.23	□□□□□ -2.37
snR49	snR49	YOL075C	Q08234	1294 aa		0.23	□□□□□ -2.37
snR49	snR49	ERP3	Q12403	225 aa		0.23	□□□□□ -2.37
snR49	snR49	SPP381	P38282	291 aa	Predicted RBP	0.22	□□□□□ -2.37
snR49	snR49	YNL320W	P42840	284 aa		0.22	□□□□□ -2.37
snR49	snR49	MEH1	Q02205	184 aa		0.22	□□□□□ -2.37
snR49	snR49	RPN6	Q12377	434 aa		0.22	□□□□□ -2.37
snR49	snR49	HIS3	P06633	220 aa		0.21	□□□□□ -2.38
snR49	snR49	SRP72	P38688	640 aa	Known RBP	0.21	□□□□□ -2.38
snR49	snR49	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.21	□□□□□ -2.38	not detected
snR49	snR49	EDC2	P40023	145 aa	Predicted RBP	0.21	□□□□□ -2.38
snR49	snR49	PMT4	P46971	762 aa		0.21	□□□□□ -2.38
snR49	snR49	ERB1	Q04660	807 aa	Known RBP	0.21	□□□□□ -2.38
snR49	snR49	INM2	Q05533	292 aa		0.21	□□□□□ -2.38
snR49	snR49	MIM1	Q08176	113 aa		0.21	□□□□□ -2.38
snR49	snR49	YPL150W	Q12152	901 aa		0.21	□□□□□ -2.38
snR49	snR49	PRR2	Q12310	699 aa		0.21	□□□□□ -2.38
snR49	snR49	MHP1	P43638	1398 aa		0.2	□□□□□ -2.38
snR49	snR49	KAP104	P38217	918 aa	Known RBP	0.2	□□□□□ -2.38
snR49	snR49	LYS12	P40495	371 aa	Known RBP	0.2	□□□□□ -2.38
snR49	snR49	LST7	P53237	242 aa		0.2	□□□□□ -2.38
snR49	snR49	YGR111W	P53265	400 aa		0.2	□□□□□ -2.38
snR49	snR49	YLR287C	Q05881	355 aa		0.2	□□□□□ -2.38
snR49	snR49	IPK1	Q06667	281 aa		0.2	□□□□□ -2.38
snR49	snR49	RRT12	P25381	491 aa		0.19	□□□□□ -2.38
snR49	snR49	ATG7	P38862	630 aa		0.19	□□□□□ -2.38
snR49	snR49	NDE1	P40215	560 aa		0.19	□□□□□ -2.38
snR49	snR49	MDM1	Q01846	1127 aa		0.19	□□□□□ -2.38
snR49	snR49	EBS1	Q03466	884 aa	Known RBP	0.19	□□□□□ -2.38
snR49	snR49	RTC5	Q12108	567 aa	Known RBP	0.19	□□□□□ -2.38
snR49	snR49	EFB1	P32471	206 aa	Known RBP	0.18	□□□□□ -2.38
snR49	snR49	MMS21	P38632	267 aa		0.18	□□□□□ -2.38
snR49	snR49	YJR141W	P47172	347 aa	Predicted RBP	0.18	□□□□□ -2.38
snR49	snR49	SPH1	Q06160	661 aa		0.18	□□□□□ -2.38
snR49	snR49	ISA2	Q12425	185 aa		0.18	□□□□□ -2.38
snR49	snR49	CBP2	P03874	630 aa	Predicted RBP	0.17	□□□□□ -2.38
snR49	snR49	YHL044W	P38727	235 aa		0.17	□□□□□ -2.38
snR49	snR49	ZIM17	P42844	174 aa		0.17	□□□□□ -2.38
snR49	snR49	RET3	P53600	189 aa		0.17	□□□□□ -2.38
snR49	snR49	SLM2	P53955	656 aa		0.17	□□□□□ -2.38
snR49	snR49	OSH6	Q02201	448 aa		0.17	□□□□□ -2.38
snR49	snR49	GRH1	Q04410	372 aa	Known RBP	0.17	□□□□□ -2.38
snR49	snR49	SPO77	Q06134	477 aa		0.17	□□□□□ -2.38
snR49	snR49	PFK27	Q12471	397 aa	Predicted RBP	0.17	□□□□□ -2.38
snR49	snR49	DPM1	P14020	267 aa	Known RBP	0.16	□□□□□ -2.38
snR49	snR49	VPS1	P21576	704 aa	Known RBP	0.16	□□□□□ -2.38
snR49	snR49	MPE1	P35728	441 aa	Known RBP	0.16	□□□□□ -2.38
snR49	snR49	COS6	P53344	381 aa		0.16	□□□□□ -2.38
snR49	snR49	BIO4	P53630	237 aa		0.16	□□□□□ -2.38
snR49	snR49	ALG9	P53868	555 aa	Known RBP	0.16	□□□□□ -2.38
snR49	snR49	YPR078C	Q06813	372 aa		0.16	□□□□□ -2.38
snR49	snR49	DCI1	Q08558	271 aa		0.16	□□□□□ -2.38
snR49	snR49	EMC6	Q12431	108 aa		0.16	□□□□□ -2.38
snR49	snR49	RPS16A	P0CX51	143 aa	Known RBP	0.15	□□□□□ -2.39
snR49	snR49	RPS16B	P0CX52	143 aa	Known RBP	0.15	□□□□□ -2.39
snR49	snR49	ZWF1	P11412	505 aa	Known RBP	0.15	□□□□□ -2.39
snR49	snR49	MRPS5	P33759	307 aa		0.15	□□□□□ -2.39
snR49	snR49	TRM7	P38238	310 aa	Known RBP	0.15	□□□□□ -2.39
snR49	snR49	CSM3	Q04659	317 aa		0.15	□□□□□ -2.39
snR49	snR49	CTS2	Q06350	511 aa		0.15	□□□□□ -2.39
snR49	snR49	RRG1	Q12167	365 aa	Predicted RBP	0.15	□□□□□ -2.39
snR49	snR49	RPN5	Q12250	445 aa	Known RBP	0.15	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms