RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C CBS2P14905 389 aa1.92□□□□□ -2.1
UBP11YKR098C PRR1P28708 518 aa1.92□□□□□ -2.1
UBP11YKR098C SPR1P32603 445 aa1.92□□□□□ -2.1
UBP11YKR098C ZRT1P32804 376 aa1.92□□□□□ -2.1
UBP11YKR098C YHR035WP38769 630 aa1.92□□□□□ -2.1
UBP11YKR098C SMC2P38989 1170 aaKnown RBP1.92□□□□□ -2.1
UBP11YKR098C RPS14BP39516 138 aaKnown RBP1.92□□□□□ -2.1
UBP11YKR098C AIM10P39965 576 aaKnown RBP1.92□□□□□ -2.1
UBP11YKR098C YER186CP40101 306 aa1.92□□□□□ -2.1
UBP11YKR098C YPI1P43587 155 aa1.92□□□□□ -2.1
UBP11YKR098C AIM23P47015 356 aa1.92□□□□□ -2.1
UBP11YKR098C SEH1P53011 349 aaKnown RBP1.92□□□□□ -2.1
UBP11YKR098C HCH1P53834 153 aa1.92□□□□□ -2.1
UBP11YKR098C VAC7P53950 1165 aa1.92□□□□□ -2.1
UBP11YKR098C YPQ1Q12010 308 aa1.92□□□□□ -2.1
UBP11YKR098C APC9Q12107 265 aa1.92□□□□□ -2.1
UBP11YKR098C HMS1Q12398 434 aa1.92□□□□□ -2.1
UBP11YKR098C PRP46Q12417 451 aaPredicted RBP1.92□□□□□ -2.1
UBP11YKR098C UNG1P12887 359 aa1.91□□□□□ -2.1
UBP11YKR098C GIT1P25346 518 aa1.91□□□□□ -2.1
UBP11YKR098C ICL1P28240 557 aaPredicted RBP1.91□□□□□ -2.1
UBP11YKR098C BAT1P38891 393 aaKnown RBP1.91□□□□□ -2.1
UBP11YKR098C RCY1P39531 840 aa1.91□□□□□ -2.1
UBP11YKR098C OXA1P39952 402 aa1.91□□□□□ -2.1
UBP11YKR098C YGR266WP53326 701 aa1.91□□□□□ -2.1
UBP11YKR098C PRP38Q00723 242 aaPredicted RBP1.91□□□□□ -2.1
UBP11YKR098C SKI8Q02793 397 aaPredicted RBP1.91□□□□□ -2.1
UBP11YKR098C FSH2Q05015 223 aa1.91□□□□□ -2.1
UBP11YKR098C GAS2Q06135 555 aa1.91□□□□□ -2.1
UBP11YKR098C RDL2Q08742 149 aaKnown RBP1.91□□□□□ -2.1
UBP11YKR098C ATP6P00854 259 aa1.91□□□□□ -2.1
UBP11YKR098C LDS1P31379 325 aa1.91□□□□□ -2.1
UBP11YKR098C SWD2P36104 329 aaPredicted RBP1.91□□□□□ -2.1
UBP11YKR098C MRPL10P36520 322 aa1.91□□□□□ -2.1
UBP11YKR098C SWD3P38123 315 aa1.91□□□□□ -2.1
UBP11YKR098C MIG3P39943 394 aa1.91□□□□□ -2.1
UBP11YKR098C AGP3P43548 558 aa1.91□□□□□ -2.1
UBP11YKR098C MOB2P43563 287 aa1.91□□□□□ -2.1
UBP11YKR098C PMT4P46971 762 aa1.91□□□□□ -2.1
UBP11YKR098C SED5Q01590 340 aa1.91□□□□□ -2.1
UBP11YKR098C SPP2Q02521 185 aa1.91□□□□□ -2.1
UBP11YKR098C SCS7Q03529 384 aa1.91□□□□□ -2.1
UBP11YKR098C SNX41Q04053 625 aa1.91□□□□□ -2.1
UBP11YKR098C YET2Q04210 160 aa1.91□□□□□ -2.1
UBP11YKR098C RRG7Q08774 242 aaPredicted RBP1.91□□□□□ -2.1
UBP11YKR098C PRM4Q12498 284 aa1.91□□□□□ -2.1
UBP11YKR098C RPL24AP04449 155 aaKnown RBP1.9□□□□□ -2.11
UBP11YKR098C RPL31AP0C2H8 113 aaKnown RBP1.9□□□□□ -2.11
UBP11YKR098C HPR1P17629 752 aaKnown RBP1.9□□□□□ -2.11
UBP11YKR098C ISY1P21374 235 aaPredicted RBP1.9□□□□□ -2.11
UBP11YKR098C AAT2P23542 418 aaKnown RBP1.9□□□□□ -2.11
UBP11YKR098C COT1P32798 439 aa1.9□□□□□ -2.11
UBP11YKR098C MCH2P36032 473 aa1.9□□□□□ -2.11
UBP11YKR098C KEL2P50090 882 aa1.9□□□□□ -2.11
UBP11YKR098C BIO3P50277 480 aa1.9□□□□□ -2.11
UBP11YKR098C YGL242CP53066 181 aa1.9□□□□□ -2.11
UBP11YKR098C ATC1Q04005 294 aa1.9□□□□□ -2.11
UBP11YKR098C FAR10Q06001 478 aa1.9□□□□□ -2.11
UBP11YKR098C BER1Q06688 274 aaKnown RBP1.9□□□□□ -2.11
UBP11YKR098C HRT3Q12347 344 aa1.9□□□□□ -2.11
UBP11YKR098C TDH3P00359 332 aaKnown RBP RIP-Chip data1.89□□□□□ -2.11not detected
UBP11YKR098C SPS100P13130 326 aa1.89□□□□□ -2.11
UBP11YKR098C RVS161P25343 265 aaKnown RBP1.89□□□□□ -2.11
UBP11YKR098C CDC50P25656 391 aa1.89□□□□□ -2.11
UBP11YKR098C NUP2P32499 720 aa1.89□□□□□ -2.11
UBP11YKR098C PDC2P32896 925 aa1.89□□□□□ -2.11
UBP11YKR098C COS9P36034 407 aa1.89□□□□□ -2.11
UBP11YKR098C CHL4P38907 458 aa1.89□□□□□ -2.11
UBP11YKR098C PEX22P39718 180 aa1.89□□□□□ -2.11
UBP11YKR098C UTP18P40362 594 aaPredicted RBP1.89□□□□□ -2.11
UBP11YKR098C SHQ1P40486 507 aaPredicted RBP1.89□□□□□ -2.11
UBP11YKR098C YJR054WP47114 497 aa1.89□□□□□ -2.11
UBP11YKR098C NUP84P52891 726 aa1.89□□□□□ -2.11
UBP11YKR098C SHE10P53075 577 aa1.89□□□□□ -2.11
UBP11YKR098C CDH1P53197 566 aa1.89□□□□□ -2.11
UBP11YKR098C TIM11P81449 96 aaPredicted RBP1.89□□□□□ -2.11
UBP11YKR098C SLT2Q00772 484 aa1.89□□□□□ -2.11
UBP11YKR098C YLR177WQ06251 628 aa1.89□□□□□ -2.11
UBP11YKR098C MRX9Q07349 420 aaKnown RBP1.89□□□□□ -2.11
UBP11YKR098C YOR376WQ08900 122 aa1.89□□□□□ -2.11
UBP11YKR098C PRB1P09232 635 aa1.89□□□□□ -2.11
UBP11YKR098C RSR1P13856 272 aa1.89□□□□□ -2.11
UBP11YKR098C CTA1P15202 515 aa1.89□□□□□ -2.11
UBP11YKR098C COY1P34237 679 aa1.89□□□□□ -2.11
UBP11YKR098C KTI12P34253 313 aaKnown RBP1.89□□□□□ -2.11
UBP11YKR098C YKL063CP35725 167 aa1.89□□□□□ -2.11
UBP11YKR098C RCK1P38622 512 aa1.89□□□□□ -2.11
UBP11YKR098C PFS1P38872 237 aa1.89□□□□□ -2.11
UBP11YKR098C TIM17P39515 158 aa1.89□□□□□ -2.11
UBP11YKR098C SOP4P39543 234 aaPredicted RBP1.89□□□□□ -2.11
UBP11YKR098C GAB1P41733 394 aa1.89□□□□□ -2.11
UBP11YKR098C GDS1P41913 522 aa1.89□□□□□ -2.11
UBP11YKR098C AGX1P43567 385 aa1.89□□□□□ -2.11
UBP11YKR098C MRX5P47007 382 aa1.89□□□□□ -2.11
UBP11YKR098C LSB1P53281 241 aa1.89□□□□□ -2.11
UBP11YKR098C YPL077CQ02831 240 aa1.89□□□□□ -2.11
UBP11YKR098C RNH1Q04740 348 aa1.89□□□□□ -2.11
UBP11YKR098C ASR1Q06834 288 aa1.89□□□□□ -2.11
UBP11YKR098C UTP23Q12339 254 aaKnown RBP1.89□□□□□ -2.11
UBP11YKR098C ERP3Q12403 225 aa1.89□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms