RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	CSR2	Q12734	1121 aa		3.87	□□□□□ -1.79
VMA22	YHR060W	RPL42A	P0CX27	106 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	RPL42B	P0CX28	106 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	ZRC1	P20107	442 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	OSM1	P21375	501 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	RPL16A	P26784	199 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	NDC1	P32500	655 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	LDB7	P38210	180 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	THO1	P40040	218 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	JLP2	P40206	208 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	YIL029C	P40538	142 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	PSA1	P41940	361 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	YFL040W	P43562	540 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	CPD1	P53314	239 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	not detected
VMA22	YHR060W	RPM2	Q02773	1202 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	RIM13	Q03792	727 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	GRS2	Q06817	618 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	POM33	Q12164	279 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	MSH5	Q12175	901 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	UTP23	Q12339	254 aa	Known RBP	3.86	□□□□□ -1.79
VMA22	YHR060W	EAF3	Q12432	401 aa		3.86	□□□□□ -1.79
VMA22	YHR060W	RPL31A	P0C2H8	113 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	MATALPHA1	P0CY06	175 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	HMLALPHA1	P0CY07	175 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	MDM10	P18409	493 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	RPL16B	P26785	198 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	VMA6	P32366	345 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	NAT2	P37293	288 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	DTR1	P38125	572 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	YBP1	P38315	674 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	PFS1	P38872	237 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	RFC4	P40339	323 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	TES1	P41903	349 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	YCH1	P42937	148 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	ABM1	P47146	123 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	LSG1	P53145	640 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	HOP2	P53187	214 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	RPL15B	P54780	204 aa	Predicted RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	YDR209C	Q03480	137 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	OST6	Q03723	332 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	SNX41	Q04053	625 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	SPO77	Q06134	477 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	DTD1	Q07648	150 aa	Known RBP	3.85	□□□□□ -1.79
VMA22	YHR060W	YLR012C	Q07927	99 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	SMC5	Q08204	1093 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	HMS1	Q12398	434 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	YCR024C-B	Q3E7Z8	88 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	AI5_BETA	Q9ZZX0	354 aa		3.85	□□□□□ -1.79
VMA22	YHR060W	YER190C-B	P0CX94	160 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	YEL077W-A	P0CX95	160 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	YGR296C-B	P0CX96	160 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	YPL283W-B	P0CX97	160 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	YPR204C-A	P0CX98	160 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	STE18	P18852	110 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	DAL81	P21657	970 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	RNA15	P25299	296 aa	Predicted RBP	3.84	□□□□□ -1.79
VMA22	YHR060W	PHA2	P32452	334 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	PMU1	P36069	295 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	MIX23	P38162	196 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	ECM8	P38246	354 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	NPT1	P39683	429 aa	Known RBP	3.84	□□□□□ -1.79
VMA22	YHR060W	RPL10	P41805	221 aa	Known RBP	3.84	□□□□□ -1.79
VMA22	YHR060W	YGR210C	P42942	411 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	LIF1	P53150	421 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	YDL114W	Q07530	308 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	DSE3	Q08729	430 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	DDC1	Q08949	612 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	CSM4	Q08955	156 aa		3.84	□□□□□ -1.79
VMA22	YHR060W	RPL20A	P0CX23	172 aa	Known RBP	3.83	□□□□□ -1.8
VMA22	YHR060W	RPL20B	P0CX24	172 aa	Predicted RBP	3.83	□□□□□ -1.8
VMA22	YHR060W	YPK2	P18961	677 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	PTP1	P25044	335 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	RPS5	P26783	225 aa	Known RBP	3.83	□□□□□ -1.8
VMA22	YHR060W	PRS2	P38620	318 aa	Known RBP	3.83	□□□□□ -1.8
VMA22	YHR060W	SMF2	P38778	549 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	SHC1	P39000	512 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	COX15	P40086	486 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	SLM1	P40485	686 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	PMT4	P46971	762 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	HAM1	P47119	197 aa	Known RBP	3.83	□□□□□ -1.8
VMA22	YHR060W	MRM2	P53123	320 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	YPR064W	Q12492	139 aa		3.83	□□□□□ -1.8
VMA22	YHR060W	RPL27A	P0C2H6	136 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	RPL27B	P0C2H7	136 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	ERD1	P16151	362 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	IES6	P32617	166 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	MRX3	P38172	270 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	AVT5	P38176	459 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	RCK2	P38623	610 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	OST1	P41543	476 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	IDP2	P41939	412 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	ASG7	P46993	209 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	MST27	P53176	234 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	CUS2	P53830	285 aa	Predicted RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	SNZ1	Q03148	297 aa		3.82	□□□□□ -1.8
VMA22	YHR060W	ERP1	Q05359	219 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	HCR1	Q05775	265 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	RDL2	Q08742	149 aa	Known RBP	3.82	□□□□□ -1.8
VMA22	YHR060W	YOR387C	Q08910	206 aa		3.82	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 15 ms