RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	YLR031W	Q07978	186 aa		4.27	□□□□□ -1.73
KIN28	YDL108W	MCH4	Q08268	501 aa		4.27	□□□□□ -1.73
KIN28	YDL108W	PFA4	Q12006	378 aa		4.27	□□□□□ -1.73
KIN28	YDL108W	POM33	Q12164	279 aa		4.27	□□□□□ -1.73
KIN28	YDL108W	YCL012C	Q8J0M4	134 aa		4.27	□□□□□ -1.73
KIN28	YDL108W	YDR157W	A0A023PZE8	133 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	RAD57	P25301	460 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	YCR006C	P25350	157 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	SEC1	P30619	724 aa	Known RBP	4.26	□□□□□ -1.73
KIN28	YDL108W	NDC1	P32500	655 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	YBR144C	P34215	104 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	CLG1	P35190	452 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	SPT10	P35208	640 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	not detected
KIN28	YDL108W	TSC10	P38342	320 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	PCA1	P38360	1216 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	PRS2	P38620	318 aa	Known RBP	4.26	□□□□□ -1.73
KIN28	YDL108W	ARN1	P38731	627 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	YHI9	P38765	294 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	ECM10	P39987	644 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	COX15	P40086	486 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	HPM1	P40481	377 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	CDC1	P40986	491 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	PHO86	P46956	311 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	YJR054W	P47114	497 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	YPT32	P51996	222 aa	Known RBP	4.26	□□□□□ -1.73
KIN28	YDL108W	YTP1	P53584	459 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	IBD2	P53892	351 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	ASI1	P54074	624 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	PFA5	Q03289	374 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	RRP42	Q12277	265 aa	Predicted RBP	4.26	□□□□□ -1.73
KIN28	YDL108W	CRC1	Q12289	327 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	BBP1	Q12365	385 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	ERP3	Q12403	225 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	AGC1	Q12482	902 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	RMD5	Q12508	421 aa		4.26	□□□□□ -1.73
KIN28	YDL108W	NFT1	P0CE68	1218 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	AMD1	P15274	810 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	MDM10	P18409	493 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	ART10	P18634	518 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	TAF2	P23255	1407 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	RFA3	P26755	122 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	TRR1	P29509	319 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
KIN28	YDL108W	SHE3	P38272	425 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	RRP3	P38712	501 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	SBE22	P38814	852 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	SPG5	P42933	373 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	YGR168C	P53293	376 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	YLR460C	P54007	376 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	TRM82	Q03774	444 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	YMR114C	Q04471	368 aa	Known RBP	4.25	□□□□□ -1.73
KIN28	YDL108W	RIF2	Q06208	395 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	ATP16	Q12165	160 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	RTR2	Q12378	196 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	RGS2	Q99188	309 aa		4.25	□□□□□ -1.73
KIN28	YDL108W	RPL31B	P0C2H9	113 aa	Known RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	ASP3-2	P0CX77	362 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	ASP3-3	P0CX78	362 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	ASP3-4	P0CX79	362 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	ASP3-1	P0CZ17	362 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	IES6	P32617	166 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	YSC83	P32792	385 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	SUI1	P32911	108 aa	Known RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	VPS21	P36017	210 aa	Known RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	ANR2	P36090	516 aa	Predicted RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	SHG1	P38337	142 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	UBA4	P38820	440 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	PCF11	P39081	626 aa	Predicted RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	HAT2	P39984	401 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	LCP5	P40079	357 aa	Predicted RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	RIO2	P40160	425 aa	Known RBP	4.24	□□□□□ -1.73
KIN28	YDL108W	YIL024C	P40543	189 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	GDS1	P41913	522 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	YFR020W	P43600	232 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	PTR3	P43606	678 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	RPC17	P47076	161 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	YJR030C	P47101	745 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	PHB2	P50085	310 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	YMR279C	Q03263	540 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	PLB3	Q08108	686 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	SIA1	Q12212	622 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	YLR361C-A	Q3E795	98 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	RAV1	P47104	1357 aa		4.24	□□□□□ -1.73
KIN28	YDL108W	HIS1	P00498	297 aa	Known RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	SNF3	P10870	884 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	DPM1	P14020	267 aa	Known RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	RNA15	P25299	296 aa	Predicted RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	KAR9	P32526	644 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	RAD5	P32849	1169 aa	Predicted RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	RPS1A	P33442	255 aa	Known RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	TCM62	P38228	572 aa	Known RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	VHC1	P38329	1120 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	WSC4	P38739	605 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	IKI1	P38874	309 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	GPI16	P38875	610 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	CCT4	P39078	528 aa	Known RBP	4.23	□□□□□ -1.73
KIN28	YDL108W	COA1	P40452	197 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	CIN2	P46670	268 aa		4.23	□□□□□ -1.73
KIN28	YDL108W	FAR3	P46671	204 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 155.2 ms