RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W MNT4P53745 580 aa12.79□□□□□ -0.36
DEP1YAL013W MAK3Q03503 176 aa12.79□□□□□ -0.36
DEP1YAL013W EKI1Q03764 534 aa12.79□□□□□ -0.36
DEP1YAL013W PLM2Q04383 521 aa12.79□□□□□ -0.36
DEP1YAL013W SNO4Q04902 237 aa12.79□□□□□ -0.36
DEP1YAL013W DCR2Q05924 578 aa12.79□□□□□ -0.36
DEP1YAL013W YLR173WQ06247 608 aa12.79□□□□□ -0.36
DEP1YAL013W HDA2Q06629 674 aa12.79□□□□□ -0.36
DEP1YAL013W MDM36Q06820 579 aa12.79□□□□□ -0.36
DEP1YAL013W CYK3Q07533 885 aa12.79□□□□□ -0.36
DEP1YAL013W ENB1Q08299 606 aa12.79□□□□□ -0.36
DEP1YAL013W HSP33Q08914 237 aaKnown RBP12.79□□□□□ -0.36
DEP1YAL013W HSP32Q08992 237 aa12.79□□□□□ -0.36
DEP1YAL013W YDL109CQ12103 647 aa12.79□□□□□ -0.36
DEP1YAL013W SET6Q12529 373 aa12.79□□□□□ -0.36
DEP1YAL013W YPT1P01123 206 aaKnown RBP12.78□□□□□ -0.36
DEP1YAL013W NCP1P16603 691 aaKnown RBP12.78□□□□□ -0.36
DEP1YAL013W PRP28P23394 588 aa12.78□□□□□ -0.36
DEP1YAL013W CLB2P24869 491 aa12.78□□□□□ -0.36
DEP1YAL013W HSP30P25619 332 aa12.78□□□□□ -0.36
DEP1YAL013W TRS65P32893 560 aa12.78□□□□□ -0.36
DEP1YAL013W NIC96P34077 839 aa12.78□□□□□ -0.36
DEP1YAL013W YKL071WP36086 256 aa12.78□□□□□ -0.36
DEP1YAL013W MTC4P38335 694 aaKnown RBP12.78□□□□□ -0.36
DEP1YAL013W CIN1P40987 1014 aa12.78□□□□□ -0.36
DEP1YAL013W MPP6P53725 186 aaPredicted RBP12.78□□□□□ -0.36
DEP1YAL013W AKR2Q12013 749 aa12.78□□□□□ -0.36
DEP1YAL013W CWH43P25618 953 aa12.77□□□□□ -0.37
DEP1YAL013W GPX1P36014 167 aa12.77□□□□□ -0.37
DEP1YAL013W NAB3P38996 802 aaKnown RBP RIP-Chip data12.77□□□□□ -0.37not detected
DEP1YAL013W JLP2P40206 208 aa12.77□□□□□ -0.37
DEP1YAL013W VNX1P42839 908 aa12.77□□□□□ -0.37
DEP1YAL013W CUZ1P53899 274 aa12.77□□□□□ -0.37
DEP1YAL013W RCF1Q03713 159 aa12.77□□□□□ -0.37
DEP1YAL013W MSH5Q12175 901 aa12.77□□□□□ -0.37
DEP1YAL013W IES3Q12345 250 aa12.77□□□□□ -0.37
DEP1YAL013W RAS1P01119 309 aa12.76□□□□□ -0.37
DEP1YAL013W YCL002CP25565 263 aa12.76□□□□□ -0.37
DEP1YAL013W PRE2P30656 287 aaKnown RBP12.76□□□□□ -0.37
DEP1YAL013W ARO7P32178 256 aa12.76□□□□□ -0.37
DEP1YAL013W MSN4P33749 630 aa12.76□□□□□ -0.37
DEP1YAL013W SHE1P38200 338 aa12.76□□□□□ -0.37
DEP1YAL013W TFB3Q03290 321 aa12.76□□□□□ -0.37
DEP1YAL013W DFG5Q05031 458 aa12.76□□□□□ -0.37
DEP1YAL013W MDM30Q05930 598 aa12.76□□□□□ -0.37
DEP1YAL013W YLR346CQ06139 101 aa12.76□□□□□ -0.37
DEP1YAL013W RLM1Q12224 676 aa12.76□□□□□ -0.37
DEP1YAL013W SEC12P11655 471 aa12.75□□□□□ -0.37
DEP1YAL013W GIT1P25346 518 aa12.75□□□□□ -0.37
DEP1YAL013W PUP2P32379 260 aa12.75□□□□□ -0.37
DEP1YAL013W TPO5P36029 618 aa12.75□□□□□ -0.37
DEP1YAL013W NVJ1P38881 321 aa12.75□□□□□ -0.37
DEP1YAL013W HIS6P40545 261 aa12.75□□□□□ -0.37
DEP1YAL013W MRPL1Q04599 285 aa12.75□□□□□ -0.37
DEP1YAL013W COQ10Q08058 207 aa12.75□□□□□ -0.37
DEP1YAL013W YOR376WQ08900 122 aa12.75□□□□□ -0.37
DEP1YAL013W LSO1Q3E827 93 aa12.75□□□□□ -0.37
DEP1YAL013W NUP1P20676 1076 aa12.74□□□□□ -0.37
DEP1YAL013W ZUO1P32527 433 aaKnown RBP12.74□□□□□ -0.37
DEP1YAL013W MRPL16P38064 232 aa12.74□□□□□ -0.37
DEP1YAL013W GPX2P38143 162 aa12.74□□□□□ -0.37
DEP1YAL013W YJL193WP39542 402 aa12.74□□□□□ -0.37
DEP1YAL013W YJL218WP40892 196 aaKnown RBP12.74□□□□□ -0.37
DEP1YAL013W PFS2P42841 465 aaKnown RBP12.74□□□□□ -0.37
DEP1YAL013W RRN9P53437 365 aa12.74□□□□□ -0.37
DEP1YAL013W ATG21Q02887 496 aa12.74□□□□□ -0.37
DEP1YAL013W FRE5Q08908 694 aa12.74□□□□□ -0.37
DEP1YAL013W FPS1P23900 669 aa12.73□□□□□ -0.37
DEP1YAL013W RPL24BP24000 155 aaKnown RBP12.73□□□□□ -0.37
DEP1YAL013W SLC1P33333 303 aa12.73□□□□□ -0.37
DEP1YAL013W ECT1P33412 323 aa12.73□□□□□ -0.37
DEP1YAL013W YAE1P47118 141 aaPredicted RBP12.73□□□□□ -0.37
DEP1YAL013W MKC7P53379 596 aa12.73□□□□□ -0.37
DEP1YAL013W NOG1Q02892 647 aaKnown RBP12.73□□□□□ -0.37
DEP1YAL013W GPI17Q04080 534 aa12.73□□□□□ -0.37
DEP1YAL013W MGR3Q04472 501 aa12.73□□□□□ -0.37
DEP1YAL013W UTP21Q06078 939 aaPredicted RBP12.73□□□□□ -0.37
DEP1YAL013W YOR238WQ08634 303 aa12.73□□□□□ -0.37
DEP1YAL013W RDR1Q08904 546 aa12.73□□□□□ -0.37
DEP1YAL013W YPL191CQ08930 360 aa12.73□□□□□ -0.37
DEP1YAL013W ACF2Q12168 779 aa12.73□□□□□ -0.37
DEP1YAL013W HIS7P33734 552 aaKnown RBP12.72□□□□□ -0.37
DEP1YAL013W MTC2P34246 357 aa12.72□□□□□ -0.37
DEP1YAL013W MAL32P38158 584 aa12.72□□□□□ -0.37
DEP1YAL013W AMN1P38285 549 aaPredicted RBP12.72□□□□□ -0.37
DEP1YAL013W YHR180WP38868 163 aa12.72□□□□□ -0.37
DEP1YAL013W IRC6P43615 237 aa12.72□□□□□ -0.37
DEP1YAL013W MAL12P53341 584 aa12.72□□□□□ -0.37
DEP1YAL013W CPR8P53728 308 aa12.72□□□□□ -0.37
DEP1YAL013W RRG7Q08774 242 aaPredicted RBP12.72□□□□□ -0.37
DEP1YAL013W RKM1Q08961 583 aaPredicted RBP12.72□□□□□ -0.37
DEP1YAL013W BTS1Q12051 335 aa12.72□□□□□ -0.37
DEP1YAL013W YRA1Q12159 226 aaKnown RBP12.72□□□□□ -0.37
DEP1YAL013W SCO1P23833 295 aa12.71□□□□□ -0.37
DEP1YAL013W PKP1P40530 394 aa12.71□□□□□ -0.37
DEP1YAL013W YMR315WQ04869 349 aaKnown RBP12.71□□□□□ -0.37
DEP1YAL013W BUR2Q05949 395 aa12.71□□□□□ -0.37
DEP1YAL013W TAZ1Q06510 381 aa12.71□□□□□ -0.37
DEP1YAL013W HNT3Q08702 217 aa12.71□□□□□ -0.37
DEP1YAL013W RAX1Q08760 435 aa12.71□□□□□ -0.37
Retrieved 100 of 5,963 RNA–protein pairs in 90.1 ms