RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 SLC24A3Q9HC58 644 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 GPRC5CQ9NQ84 441 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 KCNH7Q9NS40 1196 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 RBM12Q9NTZ6 932 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 CEP72Q9P209 647 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 DMGDHQ9UI17 866 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 DNAJC12Q9UKB3 198 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 UTP11Q9Y3A2 253 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 CCND2P30279 289 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 SOX10P56693 466 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 SNX1Q13596 522 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 SPDYE2Q495Y8 402 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 APOBEC3FQ8IUX4 373 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 DAGLBQ8NCG7 672 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 SPATA20Q8TB22 786 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 MGARPQ8TDB4 240 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 ATP6V0A1Q93050 837 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 CCDC77Q9BR77 488 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 MMTAG2Q9BU76 263 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 RUSC1Q9BVN2 902 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 IDI2Q9BXS1 227 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 METTL14Q9HCE5 456 aaKnown RBP9.81□□□□□ -0.84
GGA3-222ENST00000621217 HOXC10Q9NYD6 342 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 SNX12Q9UMY4 172 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 TMX2Q9Y320 296 aa9.81□□□□□ -0.84
GGA3-222ENST00000621217 NUP98P52948 1817 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ZSCAN5CA6NGD5 496 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 SMIM24O75264 130 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 PGK2P07205 417 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 NR3C2P08235 984 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 BCRP11274 1271 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 VCAM1P19320 739 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ALDH3A1P30838 453 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 COPB2P35606 906 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ZBTB16Q05516 673 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 DBN1Q16643 649 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 WDR44Q5JSH3 913 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ZNF365Q70YC5 407 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ARMC9Q7Z3E5 817 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 CDR2LQ86X02 465 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 DDX42Q86XP3 938 aaKnown RBP eCLIP9.8□□□□□ -0.84
GGA3-222ENST00000621217 NSUN6Q8TEA1 469 aaKnown RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 STMN2Q93045 179 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 TRIM4Q9C037 500 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 FAM49AQ9H0Q0 323 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 FAM184BQ9ULE4 1060 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ATP8A1Q9Y2Q0 1164 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 COL18A1P39060 1754 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 LRRIQ3A6PVS8 624 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 TRIM66O15016 1216 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 PDCLQ13371 301 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 TRPC3Q13507 836 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ZNF394Q53GI3 561 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 WDR59Q6PJI9 974 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 RNF10Q8N5U6 811 aaKnown RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 TRPM4Q8TD43 1214 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 GBP5Q96PP8 586 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 KCNK9Q9NPC2 374 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 ASIC3Q9UHC3 531 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 PPP1R11O60927 126 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 SLCO1A2P46721 670 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 FXR2P51116 673 aaKnown RBP eCLIP9.8□□□□□ -0.84
GGA3-222ENST00000621217 SATB1Q01826 763 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 TRIP13Q15645 432 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 SEL1L2Q5TEA6 688 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 GKAP1Q5VSY0 366 aaPredicted RBP9.8□□□□□ -0.84
GGA3-222ENST00000621217 PPP1R13LQ8WUF5 828 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 RASAL2Q9UJF2 1139 aa9.8□□□□□ -0.84
GGA3-222ENST00000621217 FANCGO15287 622 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 LMNB1P20700 586 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 QARSP47897 775 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 CASP5P51878 434 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 PLTPP55058 493 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 TGFB2P61812 414 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 PTK2Q05397 1052 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 DRAP1Q14919 205 aaPredicted RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 CENPPQ6IPU0 288 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 PPP1R18Q6NYC8 613 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 C15orf52Q6ZUT6 534 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 SESTD1Q86VW0 696 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 THNSL1Q8IYQ7 743 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 ARMC2Q8NEN0 867 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 DNAJC7Q99615 494 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 EXOC7Q9UPT5 735 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 EP400Q96L91 3159 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 WDR46O15213 610 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 FGGP02679 453 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 LRRC23Q53EV4 343 aaPredicted RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 BEND6Q5SZJ8 279 aaPredicted RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 RSRC2Q7L4I2 434 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 TMEM143Q96AN5 459 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 TEX13BQ9BXU2 312 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 PLAGL2Q9UPG8 496 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 AKT3Q9Y243 479 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 MARF1Q9Y4F3 1742 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 RGL2O15211 777 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 VIL1P09327 827 aaKnown RBP9.79□□□□□ -0.84
GGA3-222ENST00000621217 UCHL3P15374 230 aa9.79□□□□□ -0.84
GGA3-222ENST00000621217 IFT88Q13099 833 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms