RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 GGCXP38435 758 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 GTF2IP78347 998 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CNGA3Q16281 694 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PTPN21Q16825 1174 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 KCTD1Q719H9 257 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ARMCX2Q7L311 632 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 C3orf20Q8ND61 904 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ANKRD27Q96NW4 1050 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 NXF1Q9UBU9 619 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 SAMD9LQ8IVG5 1584 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CCNA1P78396 465 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 RESTQ13127 1097 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CEP55Q53EZ4 464 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 GJC2Q5T442 439 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ELMSAN1Q6PJG2 1045 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 NLRP14Q86W24 1093 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PCIF1Q9H4Z3 704 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CEP72Q9P209 647 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PFASO15067 1338 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 RNF103-CHMP3A0A140T963 221 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 GCP02774 474 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CALB1P05937 261 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 GYG1P46976 350 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 DMC1Q14565 340 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 TEKT4Q8WW24 435 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PLCG1P19174 1290 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CHRNA3P32297 505 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 EIF4A1P60842 406 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 AP1B1Q10567 949 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 TJAP1Q5JTD0 557 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 NUP85Q9BW27 656 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ATP6V0A4Q9HBG4 840 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 DNAJC17Q9NVM6 304 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ZSCAN32Q9NX65 697 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CCDC22O60826 627 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 S100A5P33763 92 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CACNB1Q02641 598 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 OR6B2Q6IFH4 312 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 NDST4Q9H3R1 872 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 SLC9A1P19634 815 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ADD1P35611 737 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 USP14P54578 494 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 CCDC24Q8N4L8 307 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 COG1Q8WTW3 980 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ELAC2Q9BQ52 826 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 EPN3Q9H201 632 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 SLC9A5Q14940 896 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 LRRC41Q15345 812 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PPP6R3Q5H9R7 873 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 LRRC8EQ6NSJ5 796 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 LRIG3Q6UXM1 1119 aa7.78□□□□□ -1.16
SYNE1-208ENST00000367256 ADD3Q9UEY8 706 aaKnown RBP7.78□□□□□ -1.16
SYNE1-208ENST00000367256 PLEKHG3A1L390 1219 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 BNIP3LO60238 219 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 PLD3Q8IV08 490 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF555Q8NEP9 628 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 OTULINQ96BN8 352 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 ABHD10Q9NUJ1 306 aa7.77□□□□□ -1.16
SYNE1-208ENST00000367256 PALMO75781 387 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 FAM47EQ6ZV65 393 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ADCK1Q86TW2 530 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 DDX42Q86XP3 938 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ELMOD1Q8N336 334 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 EAF2Q96CJ1 260 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 IFT43Q96FT9 208 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 AP5M1Q9H0R1 490 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 EML4Q9HC35 981 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SELENONQ9NZV5 590 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 HPCAL4Q9UM19 191 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 UBN2Q6ZU65 1347 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 HAUS5O94927 633 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 HNRNPCP07910 306 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 PDCLQ13371 301 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SYDE1Q6ZW31 735 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 AGGF1Q8N302 714 aaeCLIP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CCNYL1Q8N7R7 359 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SLC26A7Q8TE54 656 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CCDC17Q96LX7 622 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 PPP1R16BQ96T49 567 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF711Q9Y462 761 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ZNF521Q96K83 1311 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 PRPF4O43172 522 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MYO1DO94832 1006 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 VCAM1P19320 739 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MAP4P27816 1152 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SLC30A9Q6PML9 568 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 SRLQ86TD4 932 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 DDIASQ8IXT1 998 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CDHR1Q96JP9 859 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 FAM161BQ96MY7 647 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 ITGB1BP2Q9UKP3 347 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MEIS1O00470 390 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 AARSP49588 968 aaKnown RBP eCLIP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 DHX34Q14147 1143 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 MAPRE2Q15555 327 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 FAM180AQ6UWF9 173 aa7.77□□□□□ -1.17
SYNE1-208ENST00000367256 TAF1DQ9H5J8 278 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 RPF1Q9H9Y2 349 aaKnown RBP7.77□□□□□ -1.17
SYNE1-208ENST00000367256 CYP26B1Q9NR63 512 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms