RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 DCAF8L2P0C7V8 631 aa12.11□□□□□ -0.47
SYNE1-208ENST00000367256 PELP1Q8IZL8 1130 aaKnown RBP11.92□□□□□ -0.5
SYNE1-208ENST00000367256 MYT1Q01538 1121 aa11.85□□□□□ -0.51
SYNE1-208ENST00000367256 SUPT5HO00267 1087 aaKnown RBP11.57□□□□□ -0.56
SYNE1-208ENST00000367256 NISCHQ9Y2I1 1504 aa11.49□□□□□ -0.57
SYNE1-208ENST00000367256 EHMT2Q96KQ7 1210 aa11.42□□□□□ -0.58
SYNE1-208ENST00000367256 ERICH6Q7L0X2 663 aa11.4□□□□□ -0.58
SYNE1-208ENST00000367256 APLP2Q06481 763 aa11.35□□□□□ -0.59
SYNE1-208ENST00000367256 SHROOM4Q9ULL8 1493 aa11.34□□□□□ -0.59
SYNE1-208ENST00000367256 CCER1Q8TC90 406 aaPredicted RBP11.32□□□□□ -0.6
SYNE1-208ENST00000367256 CENPBP07199 599 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-208ENST00000367256 ZEB1P37275 1124 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-208ENST00000367256 TTBK1Q5TCY1 1321 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-208ENST00000367256 FAM9AQ8IZU1 332 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-208ENST00000367256 PCGF6Q9BYE7 350 aa11.06□□□□□ -0.64
SYNE1-208ENST00000367256 NEFLP07196 543 aa11.05□□□□□ -0.64
SYNE1-208ENST00000367256 YTHDC1Q96MU7 727 aaKnown RBP10.94□□□□□ -0.66
SYNE1-208ENST00000367256 RANGAP1P46060 587 aaPredicted RBP10.9□□□□□ -0.67
SYNE1-208ENST00000367256 DAXXQ9UER7 740 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-208ENST00000367256 ATP1B4Q9UN42 357 aaPredicted RBP10.82□□□□□ -0.68
SYNE1-208ENST00000367256 TRIM41Q8WV44 630 aa10.71□□□□□ -0.69
SYNE1-208ENST00000367256 UBTFP17480 764 aaKnown RBP10.7□□□□□ -0.7
SYNE1-208ENST00000367256 TRIM26Q12899 539 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-208ENST00000367256 HRCP23327 699 aa10.64□□□□□ -0.71
SYNE1-208ENST00000367256 ZNF316A6NFI3 1004 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-208ENST00000367256 RTL5Q5HYW3 569 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-208ENST00000367256 POLR3GLQ9BT43 218 aa10.57□□□□□ -0.72
SYNE1-208ENST00000367256 PPARGC1BQ86YN6 1023 aaKnown RBP10.51□□□□□ -0.73
SYNE1-208ENST00000367256 CLSPNQ9HAW4 1339 aa10.49□□□□□ -0.73
SYNE1-208ENST00000367256 MYT1LQ9UL68 1186 aa10.46□□□□□ -0.74
SYNE1-208ENST00000367256 ITGAEP38570 1179 aa10.43□□□□□ -0.74
SYNE1-208ENST00000367256 CNGB1Q14028 1251 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-208ENST00000367256 SLC4A1APQ9BWU0 796 aaKnown RBP10.42□□□□□ -0.74
SYNE1-208ENST00000367256 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-208ENST00000367256 HNRNPUL2Q1KMD3 747 aaKnown RBP10.38□□□□□ -0.75
SYNE1-208ENST00000367256 CHIC1Q5VXU3 224 aa10.37□□□□□ -0.75
SYNE1-208ENST00000367256 DIEXFQ68CQ4 756 aaKnown RBP10.31□□□□□ -0.76
SYNE1-208ENST00000367256 ZBTB47Q9UFB7 747 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-208ENST00000367256 BCANQ96GW7 911 aa10.24□□□□□ -0.77
SYNE1-208ENST00000367256 CDK11AQ9UQ88 783 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-208ENST00000367256 CANXP27824 592 aaKnown RBP10.21□□□□□ -0.78
SYNE1-208ENST00000367256 ANP32AP39687 249 aaKnown RBP10.15□□□□□ -0.78
SYNE1-208ENST00000367256 FAM50AQ14320 339 aaKnown RBP10.15□□□□□ -0.78
SYNE1-208ENST00000367256 GTF3C3Q9Y5Q9 886 aa10.14□□□□□ -0.79
SYNE1-208ENST00000367256 BCL11AQ9H165 835 aa10.14□□□□□ -0.79
SYNE1-208ENST00000367256 ANP32CO43423 234 aa10.13□□□□□ -0.79
SYNE1-208ENST00000367256 ANP32BQ92688 251 aaKnown RBP10.12□□□□□ -0.79
SYNE1-208ENST00000367256 ZNF326Q5BKZ1 582 aaKnown RBP10.11□□□□□ -0.79
SYNE1-208ENST00000367256 TRIM52Q96A61 297 aa10.11□□□□□ -0.79
SYNE1-208ENST00000367256 SLC24A1O60721 1099 aa10.1□□□□□ -0.79
SYNE1-208ENST00000367256 LOC105371045A0A1W2PR82 267 aa10.1□□□□□ -0.79
SYNE1-208ENST00000367256 NEUROD1Q13562 356 aa10.09□□□□□ -0.79
SYNE1-208ENST00000367256 GLIPR1L2Q4G1C9 344 aa10.09□□□□□ -0.79
SYNE1-208ENST00000367256 EIF5BO60841 1220 aaKnown RBP10.09□□□□□ -0.79
SYNE1-208ENST00000367256 ACIN1Q9UKV3 1341 aaKnown RBP10.08□□□□□ -0.8
SYNE1-208ENST00000367256 NEFMP07197 916 aa10.04□□□□□ -0.8
SYNE1-208ENST00000367256 NPM2Q86SE8 214 aaKnown RBP10.04□□□□□ -0.8
SYNE1-208ENST00000367256 HSP90AA1P07900 732 aaKnown RBP10.04□□□□□ -0.8
SYNE1-208ENST00000367256 DCAF1Q9Y4B6 1507 aa9.98□□□□□ -0.81
SYNE1-208ENST00000367256 UPF2Q9HAU5 1272 aaKnown RBP9.96□□□□□ -0.82
SYNE1-208ENST00000367256 ARXQ96QS3 562 aa9.87□□□□□ -0.83
SYNE1-208ENST00000367256 NBR1Q14596 966 aa9.87□□□□□ -0.83
SYNE1-208ENST00000367256 CDK11BP21127 795 aaKnown RBP9.84□□□□□ -0.83
SYNE1-208ENST00000367256 FKBP8Q14318 412 aa9.83□□□□□ -0.84
SYNE1-208ENST00000367256 ANP32EQ9BTT0 268 aa9.79□□□□□ -0.84
SYNE1-208ENST00000367256 TONSLQ96HA7 1378 aa9.79□□□□□ -0.84
SYNE1-208ENST00000367256 CCDC180Q9P1Z9 1646 aa9.79□□□□□ -0.84
SYNE1-208ENST00000367256 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-208ENST00000367256 FBLN2P98095 1184 aa9.77□□□□□ -0.84
SYNE1-208ENST00000367256 HNRNPUQ00839 825 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE1-208ENST00000367256 CCDC136Q96JN2 1154 aa9.76□□□□□ -0.85
SYNE1-208ENST00000367256 MYH16Q9H6N6 1097 aa9.76□□□□□ -0.85
SYNE1-208ENST00000367256 ARID3CA6NKF2 412 aa9.75□□□□□ -0.85
SYNE1-208ENST00000367256 TNNT2P45379 298 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-208ENST00000367256 ZNF777Q9ULD5 760 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-208ENST00000367256 ESF1Q9H501 851 aaKnown RBP9.73□□□□□ -0.85
SYNE1-208ENST00000367256 FAM9BQ8IZU0 186 aa9.72□□□□□ -0.85
SYNE1-208ENST00000367256 DDRGK1Q96HY6 314 aa9.72□□□□□ -0.85
SYNE1-208ENST00000367256 TRIM44Q96DX7 344 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-208ENST00000367256 BECN1Q14457 450 aa9.7□□□□□ -0.86
SYNE1-208ENST00000367256 STAG3Q9UJ98 1225 aa9.7□□□□□ -0.86
SYNE1-208ENST00000367256 NCLP19338 710 aaKnown RBP9.69□□□□□ -0.86
SYNE1-208ENST00000367256 CSRNP3Q8WYN3 585 aa9.69□□□□□ -0.86
SYNE1-208ENST00000367256 WDR43Q15061 677 aaKnown RBP eCLIP9.68□□□□□ -0.86
SYNE1-208ENST00000367256 GOLGA6L22H0YM25 854 aa9.67□□□□□ -0.86
SYNE1-208ENST00000367256 P3H3Q8IVL6 736 aa9.66□□□□□ -0.86
SYNE1-208ENST00000367256 PTMAP06454 111 aaKnown RBP9.66□□□□□ -0.86
SYNE1-208ENST00000367256 SALL2Q9Y467 1007 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-208ENST00000367256 ZRSR1Q15695 479 aaKnown RBP9.65□□□□□ -0.86
SYNE1-208ENST00000367256 SCAF1Q9H7N4 1312 aaKnown RBP9.65□□□□□ -0.86
SYNE1-208ENST00000367256 TMC1Q8TDI8 760 aa9.65□□□□□ -0.87
SYNE1-208ENST00000367256 ERICH6BQ5W0A0 696 aa9.64□□□□□ -0.87
SYNE1-208ENST00000367256 CHGAP10645 457 aaKnown RBP9.63□□□□□ -0.87
SYNE1-208ENST00000367256 ABCC9O60706 1549 aa9.62□□□□□ -0.87
SYNE1-208ENST00000367256 SCRIBQ14160 1630 aa9.62□□□□□ -0.87
SYNE1-208ENST00000367256 DDX10Q13206 875 aaKnown RBP9.62□□□□□ -0.87
SYNE1-208ENST00000367256 CASC1Q6TDU7 716 aa9.61□□□□□ -0.87
SYNE1-208ENST00000367256 MRS2Q9HD23 443 aa9.61□□□□□ -0.87
SYNE1-208ENST00000367256 PLPPR3Q6T4P5 718 aa9.61□□□□□ -0.87
SYNE1-208ENST00000367256 DNTTIP2Q5QJE6 756 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms