RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 MRPL4Q9BYD3 311 aaKnown RBP16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 ZSWIM5Q9P217 1185 aa16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 BTBD8Q5XKL5 378 aa16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 FAM213AQ9BRX8 229 aa16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 AP1M1Q9BXS5 423 aa16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 CASS4Q9NQ75 786 aa16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 AFF4Q9UHB7 1163 aaKnown RBP16.75■□□□□ 0.27
NUCKS1-201ENST00000367142 NAALADL2Q58DX5 795 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 TMEM270Q6UE05 265 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 LBHD1Q9BQE6 289 aaPredicted RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 SLC4A7Q9Y6M7 1214 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 NLRP1Q9C000 1473 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 MAPK13O15264 365 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 CYP2E1P05181 493 aaPredicted RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 KLHL38Q2WGJ6 581 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ADCK5Q3MIX3 580 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 SYNE4Q8N205 404 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 MXD3Q9BW11 206 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 PIH1D3Q9NQM4 214 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 TRIM33Q9UPN9 1127 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ZNF335Q9H4Z2 1342 aaPredicted RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ATP8B1O43520 1251 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 MDM2Q00987 491 aaPredicted RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 DDX53Q86TM3 631 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 SPTLC3Q9NUV7 552 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 PCDHB8Q9UN66 801 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 CLCA2Q9UQC9 943 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 APOBEC2Q9Y235 224 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 HEY1Q9Y5J3 304 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 GTPBP10A4D1E9 387 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ADORA2BP29275 332 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 LIFRP42702 1097 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 RASGRF1Q13972 1273 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 RCSD1Q6JBY9 416 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ALKBH5Q6P6C2 394 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 UNC13DQ70J99 1090 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 LINC00301Q8NCQ3 95 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 CFAP74Q9C0B2 1584 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ACAD9Q9H845 621 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 ARAP3Q8WWN8 1544 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 MIF4GDA9UHW6 222 aaKnown RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 MOCS2O96007 188 aaPredicted RBP16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 DPCR1Q3MIW9 517 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 TEDDM1Q5T9Z0 273 aa16.74■□□□□ 0.27
NUCKS1-201ENST00000367142 SYNGAP1Q96PV0 1343 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 MCF2P10911 925 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 CDC25AP30304 524 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 CDKL3Q8IVW4 592 aaPredicted RBP16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 OR9Q1Q8NGQ5 310 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 OTUD5Q96G74 571 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 NAF1Q96HR8 494 aaKnown RBP16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 SPON2Q9BUD6 331 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 NOVA2Q9UNW9 492 aaKnown RBP16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 CFAP69A5D8W1 941 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 KBTBD13C9JR72 458 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 ALDH1A1P00352 501 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 NNTQ13423 1086 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 DCUN1D1Q96GG9 259 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 POLR3FQ9H1D9 316 aaPredicted RBP16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 PCDHB6Q9Y5E3 794 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 AATKQ6ZMQ8 1374 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 ST8SIA6P61647 398 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 ZNF235Q14590 738 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 TTC17Q96AE7 1141 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 VPS11Q9H270 941 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 FLOT2Q14254 428 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 ALS2CLQ60I27 953 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 HEATR6Q6AI08 1181 aaKnown RBP16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 PODNQ7Z5L7 613 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 SCOCQ9UIL1 159 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 NEO1Q92859 1461 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 SLC16A4O15374 487 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 ZMYND10O75800 440 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 CACNB3P54284 484 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 GPSM2P81274 684 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 NME3Q13232 169 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 PASD1Q8IV76 773 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 OSBP2Q969R2 916 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 KDM4CQ9H3R0 1056 aa16.73■□□□□ 0.27
NUCKS1-201ENST00000367142 PFDN1O60925 122 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 VCPP55072 806 aaKnown RBP16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 PRAMEP78395 509 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SYT2Q8N9I0 419 aaPredicted RBP16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 DCTN3O75935 186 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 FGGP02679 453 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SKIP12755 728 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 ATICP31939 592 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 TDRD3Q9H7E2 651 aaKnown RBP16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 CFAP43Q8NDM7 1665 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 FDX1P10109 184 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 CAV1Q03135 178 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SPARCL1Q14515 664 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 PI16Q6UXB8 463 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 DYDC2Q96IM9 177 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SELENONQ9NZV5 590 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SENP1Q9P0U3 644 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 TJP2Q9UDY2 1190 aa16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 LSM7Q9UK45 103 aaKnown RBP16.72■□□□□ 0.27
NUCKS1-201ENST00000367142 SOWAHDA6NJG2 315 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms