RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	GLY1	P37303	387 aa	Known RBP	5.25	□□□□□ -1.57
SHE2	YKL130C	RSC30	P38781	883 aa		5.25	□□□□□ -1.57
SHE2	YKL130C	SCW11	P53189	542 aa		5.25	□□□□□ -1.57
SHE2	YKL130C	ARG82	P07250	355 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	MIP1	P15801	1254 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	KTR1	P27810	393 aa	Known RBP	5.24	□□□□□ -1.57
SHE2	YKL130C	CSN12	P47130	423 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	APP1	P53933	587 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	ITT1	Q04638	464 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	AIM7	Q12156	149 aa		5.24	□□□□□ -1.57
SHE2	YKL130C	LSC2	P53312	427 aa		5.23	□□□□□ -1.57
SHE2	YKL130C	YBL086C	P38177	466 aa		5.22	□□□□□ -1.57
SHE2	YKL130C	AAD14	P42884	376 aa		5.22	□□□□□ -1.57
SHE2	YKL130C	YIR007W	P40566	764 aa		5.21	□□□□□ -1.58
SHE2	YKL130C	TY1A-BL	Q12266	440 aa		5.21	□□□□□ -1.58
SHE2	YKL130C	EMW1	P42842	904 aa	Known RBP	5.2	□□□□□ -1.58
SHE2	YKL130C	YGR035C	P53222	116 aa		5.2	□□□□□ -1.58
SHE2	YKL130C	UBP2	Q01476	1272 aa		5.2	□□□□□ -1.58
SHE2	YKL130C	DLD1	P32891	587 aa		5.19	□□□□□ -1.58
SHE2	YKL130C	FIG4	P42837	879 aa		5.19	□□□□□ -1.58
SHE2	YKL130C	TRK2	P28584	889 aa		5.18	□□□□□ -1.58
SHE2	YKL130C	RAD59	Q12223	238 aa		5.18	□□□□□ -1.58
SHE2	YKL130C	MKS1	P34072	584 aa		5.17	□□□□□ -1.58
SHE2	YKL130C	YJR098C	P47139	656 aa		5.17	□□□□□ -1.58
SHE2	YKL130C	TCB1	Q12466	1186 aa		5.17	□□□□□ -1.58
SHE2	YKL130C	MTC5	Q03897	1148 aa		5.16	□□□□□ -1.58
SHE2	YKL130C	HPF1	Q05164	967 aa		5.16	□□□□□ -1.58
SHE2	YKL130C	TEC1	P18412	486 aa		5.15	□□□□□ -1.59
SHE2	YKL130C	DFG5	Q05031	458 aa		5.15	□□□□□ -1.59
SHE2	YKL130C	BDS1	Q08347	646 aa		5.14	□□□□□ -1.59
SHE2	YKL130C	RQC2	Q12532	1038 aa	Known RBP	5.13	□□□□□ -1.59
SHE2	YKL130C	SSA2	P10592	639 aa	Known RBP	5.12	□□□□□ -1.59
SHE2	YKL130C	OSH7	P38755	437 aa		5.12	□□□□□ -1.59
SHE2	YKL130C	ROG3	P43602	733 aa		5.11	□□□□□ -1.59
SHE2	YKL130C	KIN1	P13185	1064 aa		5.1	□□□□□ -1.59
SHE2	YKL130C	GUT2	P32191	649 aa		5.1	□□□□□ -1.59
SHE2	YKL130C	FBP26	P32604	452 aa		5.1	□□□□□ -1.59
SHE2	YKL130C	MAK16	P10962	306 aa	Predicted RBP	5.09	□□□□□ -1.59
SHE2	YKL130C	TY1A-MR1	Q04215	440 aa		5.09	□□□□□ -1.59
SHE2	YKL130C	YPR084W	Q06821	456 aa		5.09	□□□□□ -1.59
SHE2	YKL130C	YPR204W	Q08995	1032 aa		5.08	□□□□□ -1.6
SHE2	YKL130C	CCP1	P00431	361 aa		5.07	□□□□□ -1.6
SHE2	YKL130C	STE6	P12866	1290 aa		5.07	□□□□□ -1.6
SHE2	YKL130C	ATG20	Q07528	640 aa		5.07	□□□□□ -1.6
SHE2	YKL130C	STE20	Q03497	939 aa	Known RBP	5.06	□□□□□ -1.6
SHE2	YKL130C	DPH6	Q12429	685 aa		5.06	□□□□□ -1.6
SHE2	YKL130C	ISU1	Q03020	165 aa		5.05	□□□□□ -1.6
SHE2	YKL130C	DLD3	P39976	496 aa	Known RBP	5.04	□□□□□ -1.6
SHE2	YKL130C	NAF1	P53919	492 aa	Known RBP	5.04	□□□□□ -1.6
SHE2	YKL130C	CDC19	P00549	500 aa	Known RBP	5.03	□□□□□ -1.6
SHE2	YKL130C	RPP2B	P02400	110 aa	Known RBP	5.03	□□□□□ -1.6
SHE2	YKL130C	ICP55	P40051	511 aa		5.03	□□□□□ -1.6
SHE2	YKL130C	LYS5	P50113	272 aa		5.03	□□□□□ -1.6
SHE2	YKL130C	FRA1	Q07825	749 aa		5.03	□□□□□ -1.6
SHE2	YKL130C	GUA1	P38625	525 aa	Known RBP	5.02	□□□□□ -1.61
SHE2	YKL130C	NAM8	Q00539	523 aa	Known RBP	5.02	□□□□□ -1.61
SHE2	YKL130C	VTC4	P47075	721 aa		5.01	□□□□□ -1.61
SHE2	YKL130C	LEU3	P08638	886 aa		5	□□□□□ -1.61
SHE2	YKL130C	CSE4	P36012	229 aa		5	□□□□□ -1.61
SHE2	YKL130C	JJJ3	P47138	172 aa		5	□□□□□ -1.61
SHE2	YKL130C	PUS1	Q12211	544 aa	Known RBP	5	□□□□□ -1.61
SHE2	YKL130C	DAL1	P32375	460 aa		4.99	□□□□□ -1.61
SHE2	YKL130C	ISF1	P32488	338 aa		4.99	□□□□□ -1.61
SHE2	YKL130C	RPN1	P38764	993 aa	Known RBP	4.99	□□□□□ -1.61
SHE2	YKL130C	EMP47	P43555	445 aa		4.99	□□□□□ -1.61
SHE2	YKL130C	ISR1	Q06098	443 aa	Known RBP	4.99	□□□□□ -1.61
SHE2	YKL130C	DAT1	P13483	248 aa	Known RBP	4.98	□□□□□ -1.61
SHE2	YKL130C	YBL036C	P38197	257 aa		4.98	□□□□□ -1.61
SHE2	YKL130C	CUZ1	P53899	274 aa		4.98	□□□□□ -1.61
SHE2	YKL130C	MDJ1	P35191	511 aa		4.97	□□□□□ -1.61
SHE2	YKL130C	MRX12	P47084	519 aa		4.97	□□□□□ -1.61
SHE2	YKL130C	PHM7	Q12252	991 aa		4.97	□□□□□ -1.61
SHE2	YKL130C	SPT5	P27692	1063 aa	Known RBP	4.96	□□□□□ -1.62
SHE2	YKL130C	BRL1	P38770	471 aa		4.96	□□□□□ -1.62
SHE2	YKL130C	CEM1	P39525	442 aa		4.96	□□□□□ -1.62
SHE2	YKL130C	WTM2	Q12206	467 aa		4.96	□□□□□ -1.62
SHE2	YKL130C	MCM16	Q12262	181 aa		4.96	□□□□□ -1.62
SHE2	YKL130C	UTR2	P32623	467 aa		4.95	□□□□□ -1.62
SHE2	YKL130C	LSB3	P43603	459 aa	Known RBP	4.95	□□□□□ -1.62
SHE2	YKL130C	NSG2	P53898	299 aa		4.95	□□□□□ -1.62
SHE2	YKL130C	YDJ1	P25491	409 aa	Known RBP	4.94	□□□□□ -1.62
SHE2	YKL130C	TBS1	P38114	1094 aa		4.94	□□□□□ -1.62
SHE2	YKL130C	UBP15	P50101	1230 aa		4.94	□□□□□ -1.62
SHE2	YKL130C	HPC2	Q01448	625 aa		4.94	□□□□□ -1.62
SHE2	YKL130C	YMR265C	Q03508	461 aa	Known RBP	4.94	□□□□□ -1.62
SHE2	YKL130C	THI72	Q08579	599 aa		4.94	□□□□□ -1.62
SHE2	YKL130C	SPT2	P06843	333 aa	Predicted RBP	4.93	□□□□□ -1.62
SHE2	YKL130C	SSN3	P39073	555 aa		4.93	□□□□□ -1.62
SHE2	YKL130C	UTP7	P40055	554 aa	Known RBP	4.93	□□□□□ -1.62
SHE2	YKL130C	YFL066C	P43538	392 aa		4.93	□□□□□ -1.62
SHE2	YKL130C	MSN5	P52918	1224 aa		4.93	□□□□□ -1.62
SHE2	YKL130C	AI1	P03875	834 aa		4.92	□□□□□ -1.62
SHE2	YKL130C	AHP1	P38013	176 aa	Known RBP	4.92	□□□□□ -1.62
SHE2	YKL130C	ALA1	P40825	983 aa	Known RBP	4.92	□□□□□ -1.62
SHE2	YKL130C	APL6	P46682	809 aa		4.92	□□□□□ -1.62
SHE2	YKL130C	TFB3	Q03290	321 aa		4.92	□□□□□ -1.62
SHE2	YKL130C	DIT1	P21623	536 aa		4.91	□□□□□ -1.62
SHE2	YKL130C	HAL5	P38970	855 aa	Known RBP	4.91	□□□□□ -1.62
SHE2	YKL130C	KRE33	P53914	1056 aa	Known RBP	4.91	□□□□□ -1.62
SHE2	YKL130C	SLA1	P32790	1244 aa		4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms