RNA–Protein interactions for RNA: YGL003C

CDH1, Transcript of Activator of anaphase-promoting complex/cyclosome (APC/C), yeast

Gene CDH1, Length 1,701 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDH1	YGL003C	PDC1	P06169	563 aa	Known RBP	4.2	□□□□□ -1.74
CDH1	YGL003C	TEC1	P18412	486 aa		4.2	□□□□□ -1.74
CDH1	YGL003C	GUT2	P32191	649 aa		4.2	□□□□□ -1.74
CDH1	YGL003C	PEP12	P32854	288 aa		4.2	□□□□□ -1.74
CDH1	YGL003C	PAC1	P39946	494 aa	Known RBP	4.2	□□□□□ -1.74
CDH1	YGL003C	RPL34A	P87262	121 aa	Predicted RBP	4.2	□□□□□ -1.74
CDH1	YGL003C	NOP8	Q08287	484 aa	Predicted RBP	4.2	□□□□□ -1.74
CDH1	YGL003C	NOB1	Q08444	459 aa	Known RBP	4.2	□□□□□ -1.74
CDH1	YGL003C	PUP1	P25043	261 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	EBP2	P36049	427 aa	Known RBP	4.19	□□□□□ -1.74
CDH1	YGL003C	SLX8	P40072	274 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	ATG3	P40344	310 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	RRN7	P40992	514 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	FIG4	P42837	879 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	FRA1	Q07825	749 aa		4.19	□□□□□ -1.74
CDH1	YGL003C	RDS2	P19541	446 aa	Known RBP	4.18	□□□□□ -1.74
CDH1	YGL003C	TPD3	P31383	635 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	CAB3	P36076	571 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	TGL4	P36165	910 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	EMP47	P43555	445 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	STE20	Q03497	939 aa	Known RBP	4.18	□□□□□ -1.74
CDH1	YGL003C	SAS4	Q04003	481 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	SPT16	P32558	1035 aa	Known RBP	4.18	□□□□□ -1.74
CDH1	YGL003C	HXT10	P43581	546 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	YPR084W	Q06821	456 aa		4.18	□□□□□ -1.74
CDH1	YGL003C	CDC3	P32457	520 aa	Known RBP	4.17	□□□□□ -1.74
CDH1	YGL003C	UTP13	Q05946	817 aa	Known RBP	4.17	□□□□□ -1.74
CDH1	YGL003C	ENV9	Q08651	330 aa		4.17	□□□□□ -1.74
CDH1	YGL003C	ISF1	P32488	338 aa		4.16	□□□□□ -1.74
CDH1	YGL003C	RRD1	P40454	393 aa	Known RBP	4.16	□□□□□ -1.74
CDH1	YGL003C	YFR016C	P43597	1233 aa	Known RBP	4.16	□□□□□ -1.74
CDH1	YGL003C	YML083C	Q04526	418 aa		4.15	□□□□□ -1.74
CDH1	YGL003C	GYP1	Q08484	637 aa		4.15	□□□□□ -1.74
CDH1	YGL003C	MOD5	P07884	428 aa		4.15	□□□□□ -1.75
CDH1	YGL003C	SPA2	P23201	1466 aa	Known RBP	4.15	□□□□□ -1.75
CDH1	YGL003C	VAC17	P25591	423 aa		4.15	□□□□□ -1.75
CDH1	YGL003C	APL6	P46682	809 aa		4.15	□□□□□ -1.75
CDH1	YGL003C	GAL2	P13181	574 aa		4.14	□□□□□ -1.75
CDH1	YGL003C	MRF1	P30775	413 aa	Predicted RBP	4.14	□□□□□ -1.75
CDH1	YGL003C	KRI1	P42846	591 aa	Known RBP	4.14	□□□□□ -1.75
CDH1	YGL003C	KTR7	P40504	517 aa		4.13	□□□□□ -1.75
CDH1	YGL003C	ECM23	Q02710	187 aa		4.13	□□□□□ -1.75
CDH1	YGL003C	SKI3	P17883	1432 aa	Known RBP	4.13	□□□□□ -1.75
CDH1	YGL003C	HAP4	P14064	554 aa		4.12	□□□□□ -1.75
CDH1	YGL003C	PHO87	P25360	923 aa		4.12	□□□□□ -1.75
CDH1	YGL003C	SOH1	P38633	127 aa		4.12	□□□□□ -1.75
CDH1	YGL003C	RPS0B	P46654	252 aa	Known RBP	4.12	□□□□□ -1.75
CDH1	YGL003C	SLD2	P34252	453 aa		4.11	□□□□□ -1.75
CDH1	YGL003C	UBX7	P38349	436 aa		4.11	□□□□□ -1.75
CDH1	YGL003C	SSF1	P38789	453 aa	Predicted RBP	4.11	□□□□□ -1.75
CDH1	YGL003C	YFL034W	P43564	1073 aa		4.1	□□□□□ -1.75
CDH1	YGL003C	SUB1	P54000	292 aa	Known RBP	4.09	□□□□□ -1.75
CDH1	YGL003C	PUF6	Q04373	656 aa	Known RBP	4.09	□□□□□ -1.75
CDH1	YGL003C	GAS4	Q08271	471 aa		4.09	□□□□□ -1.75
CDH1	YGL003C	YEL077C	Q3E7X8	1277 aa		4.09	□□□□□ -1.75
CDH1	YGL003C	TSC13	Q99190	310 aa		4.09	□□□□□ -1.75
CDH1	YGL003C	KIP2	P28743	706 aa		4.09	□□□□□ -1.76
CDH1	YGL003C	ASF1	P32447	279 aa		4.09	□□□□□ -1.76
CDH1	YGL003C	IXR1	P33417	597 aa		4.09	□□□□□ -1.76
CDH1	YGL003C	NOP7	P53261	605 aa	Known RBP	4.09	□□□□□ -1.76
CDH1	YGL003C	HAT1	Q12341	374 aa		4.09	□□□□□ -1.76
CDH1	YGL003C	VRP1	P37370	817 aa		4.08	□□□□□ -1.76
CDH1	YGL003C	ACS2	P52910	683 aa	Known RBP	4.08	□□□□□ -1.76
CDH1	YGL003C	SYH1	Q02875	849 aa	Known RBP	4.08	□□□□□ -1.76
CDH1	YGL003C	ISR1	Q06098	443 aa	Known RBP	4.08	□□□□□ -1.76
CDH1	YGL003C	ATG20	Q07528	640 aa		4.08	□□□□□ -1.76
CDH1	YGL003C	EMW1	P42842	904 aa	Known RBP	4.07	□□□□□ -1.76
CDH1	YGL003C	VPS72	Q03388	795 aa		4.07	□□□□□ -1.76
CDH1	YGL003C	CWC15	Q03772	175 aa	Known RBP	4.07	□□□□□ -1.76
CDH1	YGL003C	NUG1	P40010	520 aa	Known RBP	4.07	□□□□□ -1.76
CDH1	YGL003C	BDP1	P46678	594 aa		4.07	□□□□□ -1.76
CDH1	YGL003C	ROM1	P53046	1155 aa		4.07	□□□□□ -1.76
CDH1	YGL003C	PDI1	P17967	522 aa	Known RBP	4.06	□□□□□ -1.76
CDH1	YGL003C	SDH2	P21801	266 aa		4.06	□□□□□ -1.76
CDH1	YGL003C	VAN1	P23642	535 aa		4.06	□□□□□ -1.76
CDH1	YGL003C	SWE1	P32944	819 aa		4.06	□□□□□ -1.76
CDH1	YGL003C	HAL5	P38970	855 aa	Known RBP	4.06	□□□□□ -1.76
CDH1	YGL003C	MDG1	P53885	366 aa		4.06	□□□□□ -1.76
CDH1	YGL003C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
CDH1	YGL003C	MIP1	P15801	1254 aa		4.05	□□□□□ -1.76
CDH1	YGL003C	BCK2	P33306	851 aa		4.05	□□□□□ -1.76
CDH1	YGL003C	STM1	P39015	273 aa	Known RBP	4.05	□□□□□ -1.76
CDH1	YGL003C	AIM9	P40053	627 aa	Known RBP	4.05	□□□□□ -1.76
CDH1	YGL003C	PUS5	Q06244	254 aa		4.05	□□□□□ -1.76
CDH1	YGL003C	HDA3	Q06623	655 aa		4.05	□□□□□ -1.76
CDH1	YGL003C	GIN4	Q12263	1142 aa		4.05	□□□□□ -1.76
CDH1	YGL003C	SPT2	P06843	333 aa	Predicted RBP	4.04	□□□□□ -1.76
CDH1	YGL003C	SRS2	P12954	1174 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	CST6	P40535	587 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	FRK1	Q03002	865 aa	Predicted RBP	4.04	□□□□□ -1.76
CDH1	YGL003C	ITT1	Q04638	464 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	TRS33	Q99394	268 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	RPP2B	P02400	110 aa	Known RBP	4.04	□□□□□ -1.76
CDH1	YGL003C	UBP1	P25037	809 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	FBP26	P32604	452 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	MRT4	P33201	236 aa	Known RBP	4.04	□□□□□ -1.76
CDH1	YGL003C	MKS1	P34072	584 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	SEN54	Q02825	467 aa	Predicted RBP	4.04	□□□□□ -1.76
CDH1	YGL003C	KAR5	Q04746	504 aa		4.04	□□□□□ -1.76
CDH1	YGL003C	PNP1	Q05788	311 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms