RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 CCDC9Q9Y3X0 531 aaKnown RBP13.87□□□□□ -0.19
RTN3-208ENST00000537981 PTPN23Q9H3S7 1636 aa13.87□□□□□ -0.19
RTN3-208ENST00000537981 FAM161AQ3B820 660 aa13.87□□□□□ -0.19
RTN3-208ENST00000537981 PDCL3Q9H2J4 239 aa13.87□□□□□ -0.19
RTN3-208ENST00000537981 FSD2A1L4K1 749 aa13.86□□□□□ -0.19
RTN3-208ENST00000537981 SEC24BO95487 1268 aa13.86□□□□□ -0.19
RTN3-208ENST00000537981 ABCA10Q8WWZ4 1543 aa13.86□□□□□ -0.19
RTN3-208ENST00000537981 USP19O94966 1318 aa13.86□□□□□ -0.19
RTN3-208ENST00000537981 GOLGA6L3A6NEY3 463 aa13.86□□□□□ -0.19
RTN3-208ENST00000537981 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
RTN3-208ENST00000537981 GAPVD1Q14C86 1478 aa13.85□□□□□ -0.19
RTN3-208ENST00000537981 KDM2BQ8NHM5 1336 aa13.85□□□□□ -0.19
RTN3-208ENST00000537981 TMC1Q8TDI8 760 aa13.85□□□□□ -0.19
RTN3-208ENST00000537981 ESPNB1AK53 854 aa13.84□□□□□ -0.19
RTN3-208ENST00000537981 SPRYD3Q8NCJ5 442 aa13.84□□□□□ -0.19
RTN3-208ENST00000537981 PRDM10Q9NQV6 1147 aa13.84□□□□□ -0.19
RTN3-208ENST00000537981 ABCA5Q8WWZ7 1642 aa13.84□□□□□ -0.19
RTN3-208ENST00000537981 CHMP7Q8WUX9 453 aaPredicted RBP13.83□□□□□ -0.2
RTN3-208ENST00000537981 SNAPC4Q5SXM2 1469 aa13.83□□□□□ -0.2
RTN3-208ENST00000537981 TAF7LQ5H9L4 462 aa13.83□□□□□ -0.2
RTN3-208ENST00000537981 POLR1AO95602 1720 aaPredicted RBP13.82□□□□□ -0.2
RTN3-208ENST00000537981 CENPJQ9HC77 1338 aaPredicted RBP13.82□□□□□ -0.2
RTN3-208ENST00000537981 BCORL1Q5H9F3 1711 aa13.82□□□□□ -0.2
RTN3-208ENST00000537981 NAIPQ13075 1403 aa13.82□□□□□ -0.2
RTN3-208ENST00000537981 RIPK4P57078 832 aa13.81□□□□□ -0.2
RTN3-208ENST00000537981 KIAA1211Q6ZU35 1233 aa13.81□□□□□ -0.2
RTN3-208ENST00000537981 PCF11O94913 1555 aaKnown RBP13.81□□□□□ -0.2
RTN3-208ENST00000537981 KTN1Q86UP2 1357 aaKnown RBP13.81□□□□□ -0.2
RTN3-208ENST00000537981 SPATA31E1Q6ZUB1 1445 aa13.81□□□□□ -0.2
RTN3-208ENST00000537981 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
RTN3-208ENST00000537981 ANTXR1Q9H6X2 564 aa13.81□□□□□ -0.2
RTN3-208ENST00000537981 HFM1A2PYH4 1435 aa13.8□□□□□ -0.2
RTN3-208ENST00000537981 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
RTN3-208ENST00000537981 DNAJC5Q9H3Z4 198 aa13.8□□□□□ -0.2
RTN3-208ENST00000537981 CFAP43Q8NDM7 1665 aa13.79□□□□□ -0.2
RTN3-208ENST00000537981 PKD2Q13563 968 aa13.79□□□□□ -0.2
RTN3-208ENST00000537981 RRP7BPQ9NSQ0 103 aa13.79□□□□□ -0.2
RTN3-208ENST00000537981 LRPPRCP42704 1394 aaKnown RBP13.79□□□□□ -0.2
RTN3-208ENST00000537981 MYOM3Q5VTT5 1437 aa13.79□□□□□ -0.2
RTN3-208ENST00000537981 KDM6BO15054 1643 aa13.78□□□□□ -0.2
RTN3-208ENST00000537981 NECTIN2Q92692 538 aa13.78□□□□□ -0.2
RTN3-208ENST00000537981 GTF2E1P29083 439 aaPredicted RBP13.77□□□□□ -0.21
RTN3-208ENST00000537981 BBXQ8WY36 941 aaPredicted RBP13.77□□□□□ -0.21
RTN3-208ENST00000537981 CHIC2Q9UKJ5 165 aa13.77□□□□□ -0.21
RTN3-208ENST00000537981 FAM13BQ9NYF5 915 aa13.77□□□□□ -0.21
RTN3-208ENST00000537981 TPM2P07951 284 aa13.75□□□□□ -0.21
RTN3-208ENST00000537981 CHMP4BQ9H444 224 aaKnown RBP13.75□□□□□ -0.21
RTN3-208ENST00000537981 FGD6Q6ZV73 1430 aa13.75□□□□□ -0.21
RTN3-208ENST00000537981 KIF27Q86VH2 1401 aa13.75□□□□□ -0.21
RTN3-208ENST00000537981 HSP90B1P14625 803 aaKnown RBP13.74□□□□□ -0.21
RTN3-208ENST00000537981 MYH16Q9H6N6 1097 aa13.74□□□□□ -0.21
RTN3-208ENST00000537981 BRD2P25440 801 aaKnown RBP13.73□□□□□ -0.21
RTN3-208ENST00000537981 GRPEL1Q9HAV7 217 aa13.73□□□□□ -0.21
RTN3-208ENST00000537981 GAS2L3Q86XJ1 694 aa13.73□□□□□ -0.21
RTN3-208ENST00000537981 PBRM1Q86U86 1689 aa13.73□□□□□ -0.21
RTN3-208ENST00000537981 IGF1RP08069 1367 aa13.73□□□□□ -0.21
RTN3-208ENST00000537981 VIRMAQ69YN4 1812 aaKnown RBP13.73□□□□□ -0.21
RTN3-208ENST00000537981 MCM4P33991 863 aa13.71□□□□□ -0.21
RTN3-208ENST00000537981 CENPQQ7L2Z9 268 aaPredicted RBP13.71□□□□□ -0.21
RTN3-208ENST00000537981 NLRP1Q9C000 1473 aa13.71□□□□□ -0.21
RTN3-208ENST00000537981 FMN1Q68DA7 1419 aa13.71□□□□□ -0.21
RTN3-208ENST00000537981 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.22
RTN3-208ENST00000537981 CHD1O14646 1710 aa13.7□□□□□ -0.22
RTN3-208ENST00000537981 TRAK2O60296 914 aa13.7□□□□□ -0.22
RTN3-208ENST00000537981 MRE11P49959 708 aa13.69□□□□□ -0.22
RTN3-208ENST00000537981 ZNF326Q5BKZ1 582 aaKnown RBP13.69□□□□□ -0.22
RTN3-208ENST00000537981 STAC3Q96MF2 364 aa13.69□□□□□ -0.22
RTN3-208ENST00000537981 TBC1D2Q9BYX2 928 aa13.69□□□□□ -0.22
RTN3-208ENST00000537981 SYNJ2O15056 1496 aa13.69□□□□□ -0.22
RTN3-208ENST00000537981 NAP1L2Q9ULW6 460 aaPredicted RBP13.68□□□□□ -0.22
RTN3-208ENST00000537981 TEX14Q8IWB6 1497 aa13.67□□□□□ -0.22
RTN3-208ENST00000537981 TRIM44Q96DX7 344 aaPredicted RBP13.67□□□□□ -0.22
RTN3-208ENST00000537981 MPHOSPH9Q99550 1183 aa13.67□□□□□ -0.22
RTN3-208ENST00000537981 FHOD3Q2V2M9 1422 aa13.67□□□□□ -0.22
RTN3-208ENST00000537981 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.66□□□□□ -0.22
RTN3-208ENST00000537981 R3HCC1Q9Y3T6 440 aaKnown RBP13.66□□□□□ -0.22
RTN3-208ENST00000537981 IGHDP01880 384 aa13.65□□□□□ -0.22
RTN3-208ENST00000537981 BRPF1P55201 1214 aaPredicted RBP13.65□□□□□ -0.22
RTN3-208ENST00000537981 CARMIL1Q5VZK9 1371 aa13.65□□□□□ -0.22
RTN3-208ENST00000537981 VGLL3A8MV65 326 aa13.65□□□□□ -0.22
RTN3-208ENST00000537981 HECW1Q76N89 1606 aa13.65□□□□□ -0.22
RTN3-208ENST00000537981 C1orf115Q9H7X2 142 aa13.65□□□□□ -0.22
RTN3-208ENST00000537981 ADAMTS12P58397 1594 aa13.64□□□□□ -0.23
RTN3-208ENST00000537981 JARID2Q92833 1246 aaPredicted RBP13.64□□□□□ -0.23
RTN3-208ENST00000537981 GRIN2AQ12879 1464 aa13.64□□□□□ -0.23
RTN3-208ENST00000537981 USP47Q96K76 1375 aa13.63□□□□□ -0.23
RTN3-208ENST00000537981 MYBBP1AQ9BQG0 1328 aaKnown RBP13.63□□□□□ -0.23
RTN3-208ENST00000537981 ZBTB7CA1YPR0 619 aa13.63□□□□□ -0.23
RTN3-208ENST00000537981 BECN1Q14457 450 aa13.63□□□□□ -0.23
RTN3-208ENST00000537981 SMAP1Q8IYB5 467 aaPredicted RBP13.63□□□□□ -0.23
RTN3-208ENST00000537981 BRD4O60885 1362 aaPredicted RBP13.62□□□□□ -0.23
RTN3-208ENST00000537981 HMGB1P09429 215 aaKnown RBP13.62□□□□□ -0.23
RTN3-208ENST00000537981 OFD1O75665 1012 aa13.61□□□□□ -0.23
RTN3-208ENST00000537981 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
RTN3-208ENST00000537981 ZSCAN20P17040 1043 aaPredicted RBP13.6□□□□□ -0.23
RTN3-208ENST00000537981 PDE3BQ13370 1112 aa13.6□□□□□ -0.23
RTN3-208ENST00000537981 PLCD3Q8N3E9 789 aa13.6□□□□□ -0.23
RTN3-208ENST00000537981 UQCRHLA0A096LP55 91 aa13.59□□□□□ -0.23
RTN3-208ENST00000537981 UQCRHP07919 91 aa13.59□□□□□ -0.23
RTN3-208ENST00000537981 XPCQ01831 940 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms