RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 LSM11P83369 360 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL17A1-204ENST00000433822 PPARGC1BQ86YN6 1023 aaKnown RBP11.34□□□□□ -0.59
COL17A1-204ENST00000433822 ECM2O94769 699 aaPredicted RBP11.32□□□□□ -0.6
COL17A1-204ENST00000433822 PBX2P40425 430 aa11.32□□□□□ -0.6
COL17A1-204ENST00000433822 SLC34A2O95436 690 aa11.31□□□□□ -0.6
COL17A1-204ENST00000433822 NUDT7P0C024 238 aa11.31□□□□□ -0.6
COL17A1-204ENST00000433822 TMC2Q8TDI7 906 aa11.29□□□□□ -0.6
COL17A1-204ENST00000433822 DNMBPQ6XZF7 1577 aa11.28□□□□□ -0.6
COL17A1-204ENST00000433822 PCDHGA4Q9Y5G9 962 aa11.28□□□□□ -0.6
COL17A1-204ENST00000433822 MAP3K1Q13233 1512 aa11.27□□□□□ -0.61
COL17A1-204ENST00000433822 LHX6Q9UPM6 363 aa11.27□□□□□ -0.61
COL17A1-204ENST00000433822 IFT140Q96RY7 1462 aa11.26□□□□□ -0.61
COL17A1-204ENST00000433822 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
COL17A1-204ENST00000433822 IGF1RP08069 1367 aa11.25□□□□□ -0.61
COL17A1-204ENST00000433822 ABCA10Q8WWZ4 1543 aa11.25□□□□□ -0.61
COL17A1-204ENST00000433822 AXIN2Q9Y2T1 843 aa11.22□□□□□ -0.61
COL17A1-204ENST00000433822 CUL7Q14999 1698 aa11.21□□□□□ -0.61
COL17A1-204ENST00000433822 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
COL17A1-204ENST00000433822 PSDA5PKW4 1024 aaPredicted RBP11.21□□□□□ -0.61
COL17A1-204ENST00000433822 RGL2O15211 777 aa11.21□□□□□ -0.61
COL17A1-204ENST00000433822 POTEEQ6S8J3 1075 aa11.21□□□□□ -0.61
COL17A1-204ENST00000433822 CLASP1Q7Z460 1538 aa11.2□□□□□ -0.62
COL17A1-204ENST00000433822 TOPBP1Q92547 1522 aa11.2□□□□□ -0.62
COL17A1-204ENST00000433822 PKD2Q13563 968 aa11.2□□□□□ -0.62
COL17A1-204ENST00000433822 CCER1Q8TC90 406 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-204ENST00000433822 CARMIL1Q5VZK9 1371 aa11.19□□□□□ -0.62
COL17A1-204ENST00000433822 CLSPNQ9HAW4 1339 aa11.19□□□□□ -0.62
COL17A1-204ENST00000433822 TARBP1Q13395 1621 aaKnown RBP11.19□□□□□ -0.62
COL17A1-204ENST00000433822 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.62
COL17A1-204ENST00000433822 RRBP1Q9P2E9 1410 aaKnown RBP11.18□□□□□ -0.62
COL17A1-204ENST00000433822 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
COL17A1-204ENST00000433822 ARHGAP33O14559 1287 aa11.17□□□□□ -0.62
COL17A1-204ENST00000433822 KIF13AQ9H1H9 1805 aa11.16□□□□□ -0.62
COL17A1-204ENST00000433822 EFCAB5A4FU69 1503 aa11.16□□□□□ -0.62
COL17A1-204ENST00000433822 PPP1R37O75864 691 aa11.16□□□□□ -0.62
COL17A1-204ENST00000433822 HCSTQ9UBK5 93 aa11.16□□□□□ -0.62
COL17A1-204ENST00000433822 POLA1P09884 1462 aaPredicted RBP11.16□□□□□ -0.62
COL17A1-204ENST00000433822 FHAD1B1AJZ9 1412 aa11.15□□□□□ -0.62
COL17A1-204ENST00000433822 ADGRD1Q6QNK2 874 aa11.14□□□□□ -0.63
COL17A1-204ENST00000433822 PTCD2Q8WV60 388 aaKnown RBP11.13□□□□□ -0.63
COL17A1-204ENST00000433822 ABCA5Q8WWZ7 1642 aa11.11□□□□□ -0.63
COL17A1-204ENST00000433822 KDM4FA0A1W2PPD8 638 aa11.11□□□□□ -0.63
COL17A1-204ENST00000433822 PLA2G2EQ9NZK7 142 aa11.11□□□□□ -0.63
COL17A1-204ENST00000433822 TIAM1Q13009 1591 aa11.11□□□□□ -0.63
COL17A1-204ENST00000433822 TK2O00142 265 aa11.1□□□□□ -0.63
COL17A1-204ENST00000433822 FOXK1P85037 733 aa11.1□□□□□ -0.63
COL17A1-204ENST00000433822 CFAP43Q8NDM7 1665 aa11.1□□□□□ -0.63
COL17A1-204ENST00000433822 CTTNBP2Q8WZ74 1663 aa11.1□□□□□ -0.63
COL17A1-204ENST00000433822 PLPP6Q8IY26 295 aa11.08□□□□□ -0.64
COL17A1-204ENST00000433822 GAPVD1Q14C86 1478 aa11.07□□□□□ -0.64
COL17A1-204ENST00000433822 SNAPC4Q5SXM2 1469 aa11.07□□□□□ -0.64
COL17A1-204ENST00000433822 FYCO1Q9BQS8 1478 aa11.07□□□□□ -0.64
COL17A1-204ENST00000433822 TBC1D12O60347 775 aa11.07□□□□□ -0.64
COL17A1-204ENST00000433822 GPHNQ9NQX3 736 aaPredicted RBP11.07□□□□□ -0.64
COL17A1-204ENST00000433822 ERCC6L2Q5T890 1561 aa11.07□□□□□ -0.64
COL17A1-204ENST00000433822 PPP4R3BQ5MIZ7 849 aa11.06□□□□□ -0.64
COL17A1-204ENST00000433822 CCNB3Q8WWL7 1395 aa11.05□□□□□ -0.64
COL17A1-204ENST00000433822 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.05□□□□□ -0.64
COL17A1-204ENST00000433822 RAD54L2Q9Y4B4 1467 aa11.05□□□□□ -0.64
COL17A1-204ENST00000433822 HRO43593 1189 aa11.04□□□□□ -0.64
COL17A1-204ENST00000433822 PSEN2P49810 448 aa11.04□□□□□ -0.64
COL17A1-204ENST00000433822 DMRTA1Q5VZB9 504 aa11.04□□□□□ -0.64
COL17A1-204ENST00000433822 LRRC9Q6ZRR7 1453 aa11.04□□□□□ -0.64
COL17A1-204ENST00000433822 FMN1Q68DA7 1419 aa11.03□□□□□ -0.64
COL17A1-204ENST00000433822 CASKIN1Q8WXD9 1431 aa11.03□□□□□ -0.64
COL17A1-204ENST00000433822 SAMD9Q5K651 1589 aa11.03□□□□□ -0.64
COL17A1-204ENST00000433822 DSG2Q14126 1118 aa11.02□□□□□ -0.65
COL17A1-204ENST00000433822 KANK4Q5T7N3 995 aaPredicted RBP11.02□□□□□ -0.65
COL17A1-204ENST00000433822 HS6ST3Q8IZP7 471 aa11.01□□□□□ -0.65
COL17A1-204ENST00000433822 KCNH8Q96L42 1107 aa11.01□□□□□ -0.65
COL17A1-204ENST00000433822 STAC3Q96MF2 364 aa11.01□□□□□ -0.65
COL17A1-204ENST00000433822 PCF11O94913 1555 aaKnown RBP11.01□□□□□ -0.65
COL17A1-204ENST00000433822 TTBK1Q5TCY1 1321 aaPredicted RBP11□□□□□ -0.65
COL17A1-204ENST00000433822 TDRD9Q8NDG6 1382 aaKnown RBP11□□□□□ -0.65
COL17A1-204ENST00000433822 DHX57Q6P158 1386 aaKnown RBP10.99□□□□□ -0.65
COL17A1-204ENST00000433822 PBRM1Q86U86 1689 aa10.98□□□□□ -0.65
COL17A1-204ENST00000433822 KCTD12Q96CX2 325 aaKnown RBP10.97□□□□□ -0.65
COL17A1-204ENST00000433822 KCNK17Q96T54 332 aa10.95□□□□□ -0.66
COL17A1-204ENST00000433822 MAGI1Q96QZ7 1491 aaPredicted RBP10.94□□□□□ -0.66
COL17A1-204ENST00000433822 DIEXFQ68CQ4 756 aaKnown RBP10.94□□□□□ -0.66
COL17A1-204ENST00000433822 HECW2Q9P2P5 1572 aa10.94□□□□□ -0.66
COL17A1-204ENST00000433822 TSPOAP1O95153 1857 aa10.93□□□□□ -0.66
COL17A1-204ENST00000433822 RANGAP1P46060 587 aaPredicted RBP10.93□□□□□ -0.66
COL17A1-204ENST00000433822 OXER1Q8TDS5 423 aa10.93□□□□□ -0.66
COL17A1-204ENST00000433822 ADAMTS12P58397 1594 aa10.93□□□□□ -0.66
COL17A1-204ENST00000433822 SYNJ2O15056 1496 aa10.93□□□□□ -0.66
COL17A1-204ENST00000433822 FHOD3Q2V2M9 1422 aa10.92□□□□□ -0.66
COL17A1-204ENST00000433822 KDM6BO15054 1643 aa10.92□□□□□ -0.66
COL17A1-204ENST00000433822 CHMP7Q8WUX9 453 aaPredicted RBP10.92□□□□□ -0.66
COL17A1-204ENST00000433822 CHGAP10645 457 aaKnown RBP10.91□□□□□ -0.66
COL17A1-204ENST00000433822 RYDENQ9NUL5 291 aaKnown RBP10.91□□□□□ -0.66
COL17A1-204ENST00000433822 VPS9D1Q9Y2B5 631 aa10.91□□□□□ -0.66
COL17A1-204ENST00000433822 GRIN2BQ13224 1484 aa10.91□□□□□ -0.66
COL17A1-204ENST00000433822 CCDC18Q5T9S5 1454 aa10.91□□□□□ -0.66
COL17A1-204ENST00000433822 PHLDB1Q86UU1 1377 aa10.9□□□□□ -0.66
COL17A1-204ENST00000433822 EHBP1L1Q8N3D4 1523 aa10.9□□□□□ -0.66
COL17A1-204ENST00000433822 SETD5Q9C0A6 1442 aa10.9□□□□□ -0.66
COL17A1-204ENST00000433822 CEP170Q5SW79 1584 aa10.9□□□□□ -0.67
COL17A1-204ENST00000433822 ZNF454Q8N9F8 522 aa10.89□□□□□ -0.67
COL17A1-204ENST00000433822 SLC4A5Q9BY07 1137 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms