RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 AEBP2Q6ZN18 517 aaPredicted RBP26.6■■□□□ 1.85
COL17A1-204ENST00000433822 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
COL17A1-204ENST00000433822 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
COL17A1-204ENST00000433822 PHF23Q9BUL5 403 aaPredicted RBP22.45■■□□□ 1.18
COL17A1-204ENST00000433822 FOXD1Q16676 465 aa21.22■□□□□ 0.99
COL17A1-204ENST00000433822 MSH5O43196 834 aa20■□□□□ 0.79
COL17A1-204ENST00000433822 PLPPR3Q6T4P5 718 aa19.99■□□□□ 0.79
COL17A1-204ENST00000433822 POTEDQ86YR6 584 aa19.83■□□□□ 0.77
COL17A1-204ENST00000433822 PIAS4Q8N2W9 510 aaPredicted RBP19.8■□□□□ 0.76
COL17A1-204ENST00000433822 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
COL17A1-204ENST00000433822 ADRA2BP18089 450 aa19.59■□□□□ 0.73
COL17A1-204ENST00000433822 MAPK8IP2Q13387 824 aaPredicted RBP18.05■□□□□ 0.48
COL17A1-204ENST00000433822 DMRT2Q9Y5R5 561 aa18.03■□□□□ 0.48
COL17A1-204ENST00000433822 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.48
COL17A1-204ENST00000433822 PPP4R3CPQ6ZMV5 832 aa17.46■□□□□ 0.39
COL17A1-204ENST00000433822 DCAF8L1A6NGE4 600 aa17.3■□□□□ 0.36
COL17A1-204ENST00000433822 HOXD11P31277 338 aaPredicted RBP17.28■□□□□ 0.36
COL17A1-204ENST00000433822 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
COL17A1-204ENST00000433822 CNKSR2Q8WXI2 1034 aa17.21■□□□□ 0.35
COL17A1-204ENST00000433822 RNF216Q9NWF9 866 aaPredicted RBP17.11■□□□□ 0.33
COL17A1-204ENST00000433822 RNF39Q9H2S5 420 aa17.02■□□□□ 0.32
COL17A1-204ENST00000433822 C1QBPQ07021 282 aaKnown RBP16.79■□□□□ 0.28
COL17A1-204ENST00000433822 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
COL17A1-204ENST00000433822 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
COL17A1-204ENST00000433822 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.48■□□□□ 0.23
COL17A1-204ENST00000433822 NPM3O75607 178 aaKnown RBP16.47■□□□□ 0.23
COL17A1-204ENST00000433822 U3KPZ7 1027 aaPredicted RBP16.07■□□□□ 0.16
COL17A1-204ENST00000433822 KCNA4P22459 653 aa15.95■□□□□ 0.14
COL17A1-204ENST00000433822 NISCHQ9Y2I1 1504 aa15.94■□□□□ 0.14
COL17A1-204ENST00000433822 CAPN15O75808 1086 aa15.91■□□□□ 0.14
COL17A1-204ENST00000433822 SPINK5Q9NQ38 1064 aaPredicted RBP15.89■□□□□ 0.13
COL17A1-204ENST00000433822 DSG3P32926 999 aa15.86■□□□□ 0.13
COL17A1-204ENST00000433822 SLC4A2P04920 1241 aa15.77■□□□□ 0.12
COL17A1-204ENST00000433822 APLP2Q06481 763 aa15.7■□□□□ 0.1
COL17A1-204ENST00000433822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.63■□□□□ 0.09
COL17A1-204ENST00000433822 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
COL17A1-204ENST00000433822 TRHP20396 242 aaPredicted RBP15.6■□□□□ 0.09
COL17A1-204ENST00000433822 ZNF219Q9P2Y4 722 aaPredicted RBP15.6■□□□□ 0.09
COL17A1-204ENST00000433822 POTEHQ6S545 545 aa15.52■□□□□ 0.08
COL17A1-204ENST00000433822 SAMD1Q6SPF0 538 aaPredicted RBP15.5■□□□□ 0.07
COL17A1-204ENST00000433822 ABCB7O75027 752 aa15.49■□□□□ 0.07
COL17A1-204ENST00000433822 MYCNP04198 464 aaPredicted RBP15.27■□□□□ 0.04
COL17A1-204ENST00000433822 RBM42Q9BTD8 480 aaKnown RBP15.19■□□□□ 0.02
COL17A1-204ENST00000433822 POLA2Q14181 598 aa15.14■□□□□ 0.01
COL17A1-204ENST00000433822 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
COL17A1-204ENST00000433822 FOXD4L1Q9NU39 408 aa14.99□□□□□ -0.01
COL17A1-204ENST00000433822 CHRDL2Q6WN34 429 aa14.9□□□□□ -0.02
COL17A1-204ENST00000433822 ATF5Q9Y2D1 282 aaPredicted RBP14.87□□□□□ -0.03
COL17A1-204ENST00000433822 ZBTB12Q9Y330 459 aaPredicted RBP14.87□□□□□ -0.03
COL17A1-204ENST00000433822 AKT1S1Q96B36 256 aa14.78□□□□□ -0.04
COL17A1-204ENST00000433822 OSCARQ8IYS5 282 aa14.64□□□□□ -0.07
COL17A1-204ENST00000433822 ZBTB22O15209 634 aa14.63□□□□□ -0.07
COL17A1-204ENST00000433822 REM2Q8IYK8 340 aaPredicted RBP14.62□□□□□ -0.07
COL17A1-204ENST00000433822 ATXN8OSP0DMR3 200 aa14.58□□□□□ -0.08
COL17A1-204ENST00000433822 PIP4P2Q8N4L2 257 aa14.49□□□□□ -0.09
COL17A1-204ENST00000433822 SP7Q8TDD2 431 aaPredicted RBP14.45□□□□□ -0.1
COL17A1-204ENST00000433822 PITPNM1O00562 1244 aa14.44□□□□□ -0.1
COL17A1-204ENST00000433822 FBLN2P98095 1184 aa14.4□□□□□ -0.1
COL17A1-204ENST00000433822 FXR2P51116 673 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL17A1-204ENST00000433822 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
COL17A1-204ENST00000433822 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
COL17A1-204ENST00000433822 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
COL17A1-204ENST00000433822 HAX1O00165 279 aa14.31□□□□□ -0.12
COL17A1-204ENST00000433822 ABCC9O60706 1549 aa14.2□□□□□ -0.14
COL17A1-204ENST00000433822 MKRN4PQ13434 485 aaPredicted RBP14.18□□□□□ -0.14
COL17A1-204ENST00000433822 SPDYE1Q8NFV5 336 aaPredicted RBP14.17□□□□□ -0.14
COL17A1-204ENST00000433822 ZNF692Q9BU19 519 aaPredicted RBP14.15□□□□□ -0.14
COL17A1-204ENST00000433822 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
COL17A1-204ENST00000433822 SSUH2Q9Y2M2 353 aa14.12□□□□□ -0.15
COL17A1-204ENST00000433822 PRKAR2AP13861 404 aaKnown RBP14.09□□□□□ -0.15
COL17A1-204ENST00000433822 EVX2Q03828 476 aa14.06□□□□□ -0.16
COL17A1-204ENST00000433822 C19orf67A6NJJ6 358 aa13.93□□□□□ -0.18
COL17A1-204ENST00000433822 PABPN1Q86U42 306 aaKnown RBP eCLIP13.92□□□□□ -0.18
COL17A1-204ENST00000433822 PRR29P0C7W0 189 aa13.89□□□□□ -0.19
COL17A1-204ENST00000433822 CHADLQ6NUI6 762 aa13.85□□□□□ -0.19
COL17A1-204ENST00000433822 CCDC180Q9P1Z9 1646 aa13.81□□□□□ -0.2
COL17A1-204ENST00000433822 CSRNP3Q8WYN3 585 aa13.79□□□□□ -0.2
COL17A1-204ENST00000433822 GABBR2O75899 941 aa13.77□□□□□ -0.21
COL17A1-204ENST00000433822 FARP1Q9Y4F1 1045 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-204ENST00000433822 CD44P16070 742 aaKnown RBP13.63□□□□□ -0.23
COL17A1-204ENST00000433822 CLCN6P51797 869 aa13.57□□□□□ -0.24
COL17A1-204ENST00000433822 LHX8Q68G74 356 aa13.56□□□□□ -0.24
COL17A1-204ENST00000433822 STAG3Q9UJ98 1225 aa13.54□□□□□ -0.24
COL17A1-204ENST00000433822 ZCCHC6Q5VYS8 1495 aaKnown RBP13.49□□□□□ -0.25
COL17A1-204ENST00000433822 EHMT2Q96KQ7 1210 aa13.49□□□□□ -0.25
COL17A1-204ENST00000433822 CREBZFQ9NS37 354 aa13.46□□□□□ -0.25
COL17A1-204ENST00000433822 SPDYE4A6NLX3 237 aa13.45□□□□□ -0.26
COL17A1-204ENST00000433822 POTEIP0CG38 1075 aa13.45□□□□□ -0.26
COL17A1-204ENST00000433822 ZNF579Q8NAF0 562 aaKnown RBP13.41□□□□□ -0.26
COL17A1-204ENST00000433822 ZRANB1Q9UGI0 708 aa13.41□□□□□ -0.26
COL17A1-204ENST00000433822 DCBLD2Q96PD2 775 aa13.39□□□□□ -0.27
COL17A1-204ENST00000433822 DCAF1Q9Y4B6 1507 aa13.32□□□□□ -0.28
COL17A1-204ENST00000433822 PAK3O75914 559 aaPredicted RBP13.3□□□□□ -0.28
COL17A1-204ENST00000433822 NPM1P06748 294 aaKnown RBP eCLIP13.26□□□□□ -0.29
COL17A1-204ENST00000433822 GALR2O43603 387 aaPredicted RBP13.24□□□□□ -0.29
COL17A1-204ENST00000433822 MNX1P50219 401 aaPredicted RBP13.19□□□□□ -0.3
COL17A1-204ENST00000433822 RB1CC1Q8TDY2 1594 aa13.19□□□□□ -0.3
COL17A1-204ENST00000433822 PHF12Q96QT6 1004 aa13.17□□□□□ -0.3
COL17A1-204ENST00000433822 UNC13AQ9UPW8 1703 aa13.13□□□□□ -0.31
COL17A1-204ENST00000433822 PROM2Q8N271 834 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms