RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	PFS1	P38872	237 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	PCP1	P53259	346 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	GOR1	P53839	350 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	IBD2	P53892	351 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	YNL143C	P53908	130 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	PET117	Q02771	107 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	HEL2	Q05580	639 aa	Known RBP	4.26	□□□□□ -1.73
RRP40	YOL142W	PBA1	Q05778	276 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	STE23	Q06010	1027 aa		4.26	□□□□□ -1.73
RRP40	YOL142W	SAM4	Q08985	325 aa	Known RBP	4.26	□□□□□ -1.73
RRP40	YOL142W	CSF1	Q12150	2958 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	RAD3	P06839	778 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	UBA1	P22515	1024 aa	Known RBP	4.25	□□□□□ -1.73
RRP40	YOL142W	MRPL25	P23369	157 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	CIN8	P27895	1000 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YIM1	P28625	365 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	BEM1	P29366	551 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	PRP21	P32524	280 aa	Predicted RBP	4.25	□□□□□ -1.73
RRP40	YOL142W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
RRP40	YOL142W	MIX23	P38162	196 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	IML3	P38265	245 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YSW1	P38280	609 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	TAE1	P38340	232 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	SRP72	P38688	640 aa	Known RBP	4.25	□□□□□ -1.73
RRP40	YOL142W	BAT1	P38891	393 aa	Known RBP	4.25	□□□□□ -1.73
RRP40	YOL142W	COQ5	P49017	307 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	NBP35	P52920	328 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YIP1	P53039	248 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	SPP2	Q02521	185 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	MRP51	Q02950	344 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YPL113C	Q02961	396 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	TAF11	Q04226	346 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	SFH1	Q06168	426 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YET3	Q07451	203 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	SMF3	Q12078	473 aa	Predicted RBP	4.25	□□□□□ -1.73
RRP40	YOL142W	YMR030W-A	Q3E760	96 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	YKL068W-A	Q3E826	78 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	NAG1	Q8TGN9	163 aa		4.25	□□□□□ -1.73
RRP40	YOL142W	BRR2	P32639	2163 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	CYR1	P08678	2026 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	HHF1	P02309	103 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	SSC1	P0CS90	654 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
RRP40	YOL142W	RPL3	P14126	387 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	NOP1	P15646	327 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	SEC14	P24280	304 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	CPR4	P25334	318 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	YCR099C	P25657	155 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	RIM1	P32445	135 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	SPS19	P32573	292 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	CYM1	P32898	989 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	CSE1	P33307	960 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	SRX1	P36077	127 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	LRP1	P38801	184 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	PCF11	P39081	626 aa	Predicted RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	OST1	P41543	476 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	SWC4	P53201	476 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	BIO4	P53630	237 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	DSL1	P53847	754 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	RNY1	Q02933	434 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	RPN9	Q04062	393 aa	Known RBP	4.24	□□□□□ -1.73
RRP40	YOL142W	YDR387C	Q04162	555 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	HSP31	Q04432	237 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	ATG10	Q07879	167 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	SRO7	Q12038	1033 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	RTN2	Q12443	393 aa		4.24	□□□□□ -1.73
RRP40	YOL142W	STE2	D6VTK4	431 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	INH1	P01097	85 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	GPH1	P06738	902 aa	Known RBP	4.23	□□□□□ -1.73
RRP40	YOL142W	NSP1	P14907	823 aa	Known RBP	4.23	□□□□□ -1.73
RRP40	YOL142W	YSR3	P23501	404 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	YCR051W	P25631	222 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	ECM25	P32525	599 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	LTV1	P34078	463 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	MAK5	P38112	773 aa	Predicted RBP	4.23	□□□□□ -1.73
RRP40	YOL142W	YBR032W	P38223	100 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
RRP40	YOL142W	SEC28	P40509	296 aa	Known RBP	4.23	□□□□□ -1.73
RRP40	YOL142W	CTK3	P46963	296 aa	Predicted RBP	4.23	□□□□□ -1.73
RRP40	YOL142W	YMR209C	Q03648	457 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	VTA1	Q06263	330 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	MUM3	Q08750	479 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	TMS1	Q12116	473 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	YLR108C	Q12259	485 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	YOL159C-A	Q3E769	90 aa		4.23	□□□□□ -1.73
RRP40	YOL142W	RED1	P14291	827 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	SRV2	P17555	526 aa	Known RBP	4.22	□□□□□ -1.73
RRP40	YOL142W	EPT1	P22140	391 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	PHO84	P25297	587 aa	Known RBP	4.22	□□□□□ -1.73
RRP40	YOL142W	LDB16	P25587	256 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	STB6	P36085	766 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	CYC2	P38909	366 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	STN1	P38960	494 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	MST28	P39552	234 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	TIF34	P40217	347 aa	Known RBP	4.22	□□□□□ -1.73
RRP40	YOL142W	PEP8	P40335	379 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	YGR210C	P42942	411 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	OSH6	Q02201	448 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	YLR177W	Q06251	628 aa		4.22	□□□□□ -1.73
RRP40	YOL142W	VPS68	Q12016	184 aa		4.22	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms