RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W FLO11P08640 1367 aa1.72□□□□□ -2.13
RPF1YHR088W MIG1P27705 504 aa1.72□□□□□ -2.13
RPF1YHR088W PMT2P31382 759 aa1.72□□□□□ -2.13
RPF1YHR088W MEH1Q02205 184 aa1.72□□□□□ -2.13
RPF1YHR088W YPL113CQ02961 396 aa1.72□□□□□ -2.13
RPF1YHR088W UTP15Q04305 513 aaKnown RBP1.72□□□□□ -2.13
RPF1YHR088W CSI1Q04368 295 aa1.72□□□□□ -2.13
RPF1YHR088W IPK1Q06667 281 aa1.72□□□□□ -2.13
RPF1YHR088W DIB1Q06819 143 aaPredicted RBP1.72□□□□□ -2.13
RPF1YHR088W MMT2Q08970 484 aa1.72□□□□□ -2.13
RPF1YHR088W FRE8Q12209 686 aa1.72□□□□□ -2.13
RPF1YHR088W PRP46Q12417 451 aaPredicted RBP1.72□□□□□ -2.13
RPF1YHR088W MKK1P32490 508 aa1.71□□□□□ -2.14
RPF1YHR088W VAM7P32912 316 aa1.71□□□□□ -2.14
RPF1YHR088W PEX5P35056 612 aa1.71□□□□□ -2.14
RPF1YHR088W KAP104P38217 918 aaKnown RBP1.71□□□□□ -2.14
RPF1YHR088W YMR262WP38430 313 aa1.71□□□□□ -2.14
RPF1YHR088W MOB2P43563 287 aa1.71□□□□□ -2.14
RPF1YHR088W SHS1Q07657 551 aa1.71□□□□□ -2.14
RPF1YHR088W SLM3Q12093 417 aa1.71□□□□□ -2.14
RPF1YHR088W YPR063CQ12160 140 aa1.71□□□□□ -2.14
RPF1YHR088W YKR032WP36127 104 aa1.7□□□□□ -2.14
RPF1YHR088W MIC19P43594 170 aa1.7□□□□□ -2.14
RPF1YHR088W SHE4P51534 789 aa1.7□□□□□ -2.14
RPF1YHR088W RGM1Q00453 211 aa1.7□□□□□ -2.14
RPF1YHR088W CIK1Q01649 594 aa1.7□□□□□ -2.14
RPF1YHR088W YLH47Q06493 454 aa1.7□□□□□ -2.14
RPF1YHR088W ALE1Q08548 619 aa1.7□□□□□ -2.14
RPF1YHR088W RPN8Q08723 338 aaKnown RBP1.7□□□□□ -2.14
RPF1YHR088W GPM3Q12326 303 aa1.7□□□□□ -2.14
RPF1YHR088W SNF6P18888 332 aa1.69□□□□□ -2.14
RPF1YHR088W YPS1P32329 569 aa1.69□□□□□ -2.14
RPF1YHR088W EFB1P32471 206 aaKnown RBP1.69□□□□□ -2.14
RPF1YHR088W YHR177WP38867 453 aa1.69□□□□□ -2.14
RPF1YHR088W YHR182WP38870 785 aa1.69□□□□□ -2.14
RPF1YHR088W MNL1P38888 796 aa1.69□□□□□ -2.14
RPF1YHR088W MLH1P38920 769 aa1.69□□□□□ -2.14
RPF1YHR088W CDD1Q06549 142 aa1.69□□□□□ -2.14
RPF1YHR088W YDR018CQ12185 396 aa1.69□□□□□ -2.14
RPF1YHR088W UBA3Q99344 299 aa1.69□□□□□ -2.14
RPF1YHR088W URA10P30402 227 aa1.68□□□□□ -2.14
RPF1YHR088W LCP5P40079 357 aaPredicted RBP1.68□□□□□ -2.14
RPF1YHR088W YIL054WP40524 105 aa1.68□□□□□ -2.14
RPF1YHR088W RET3P53600 189 aa1.68□□□□□ -2.14
RPF1YHR088W SUR7P54003 302 aa1.68□□□□□ -2.14
RPF1YHR088W SCS7Q03529 384 aa1.68□□□□□ -2.14
RPF1YHR088W TRM82Q03774 444 aa1.68□□□□□ -2.14
RPF1YHR088W ARR1Q06596 294 aa1.68□□□□□ -2.14
RPF1YHR088W RSA4P25382 515 aaKnown RBP1.67□□□□□ -2.14
RPF1YHR088W YKL071WP36086 256 aa1.67□□□□□ -2.14
RPF1YHR088W SPP381P38282 291 aaPredicted RBP1.67□□□□□ -2.14
RPF1YHR088W MED8P38304 223 aa1.67□□□□□ -2.14
RPF1YHR088W LYS12P40495 371 aaKnown RBP1.67□□□□□ -2.14
RPF1YHR088W MNN5P46982 586 aa1.67□□□□□ -2.14
RPF1YHR088W ASG7P46993 209 aa1.67□□□□□ -2.14
RPF1YHR088W MIX17Q03667 156 aa1.67□□□□□ -2.14
RPF1YHR088W YDR114CQ04597 100 aa1.67□□□□□ -2.14
RPF1YHR088W YPR078CQ06813 372 aa1.67□□□□□ -2.14
RPF1YHR088W SPE3Q12074 293 aaKnown RBP1.67□□□□□ -2.14
RPF1YHR088W SGT2Q12118 346 aaKnown RBP1.67□□□□□ -2.14
RPF1YHR088W BEM2P39960 2167 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W VPS63O13549 108 aa1.66□□□□□ -2.14
RPF1YHR088W RPL1AP0CX43 217 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W RPL1BP0CX44 217 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W CTA1P15202 515 aa1.66□□□□□ -2.14
RPF1YHR088W INO2P26798 304 aa1.66□□□□□ -2.14
RPF1YHR088W TAE1P38340 232 aa1.66□□□□□ -2.14
RPF1YHR088W SMC2P38989 1170 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W NBP1P52919 319 aaPredicted RBP1.66□□□□□ -2.14
RPF1YHR088W RPN5Q12250 445 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W DET1Q99288 334 aaKnown RBP1.66□□□□□ -2.14
RPF1YHR088W TDH2P00358 332 aaKnown RBP1.65□□□□□ -2.15
RPF1YHR088W TDH3P00359 332 aaKnown RBP RIP-Chip data1.65□□□□□ -2.15not detected
RPF1YHR088W MET2P08465 486 aa1.65□□□□□ -2.15
RPF1YHR088W FAR1P21268 830 aa1.65□□□□□ -2.15
RPF1YHR088W ITR2P30606 609 aa1.65□□□□□ -2.15
RPF1YHR088W SRP72P38688 640 aaKnown RBP1.65□□□□□ -2.15
RPF1YHR088W RRG9P40156 214 aa1.65□□□□□ -2.15
RPF1YHR088W YFR018CP43599 363 aa1.65□□□□□ -2.15
RPF1YHR088W ECM19Q06011 112 aa1.65□□□□□ -2.15
RPF1YHR088W PEX30Q06169 523 aa1.65□□□□□ -2.15
RPF1YHR088W CLP1Q08685 445 aaPredicted RBP1.65□□□□□ -2.15
RPF1YHR088W DFM1Q12743 341 aaKnown RBP1.65□□□□□ -2.15
RPF1YHR088W RPS14AP06367 137 aaKnown RBP1.64□□□□□ -2.15
RPF1YHR088W SAG1P20840 650 aa1.64□□□□□ -2.15
RPF1YHR088W DAL81P21657 970 aa1.64□□□□□ -2.15
RPF1YHR088W MSK1P32048 576 aa1.64□□□□□ -2.15
RPF1YHR088W IST2P38250 946 aa1.64□□□□□ -2.15
RPF1YHR088W RCK1P38622 512 aa1.64□□□□□ -2.15
RPF1YHR088W RPS14BP39516 138 aaKnown RBP1.64□□□□□ -2.15
RPF1YHR088W YML6P51998 286 aa1.64□□□□□ -2.15
RPF1YHR088W VPS9P54787 451 aa1.64□□□□□ -2.15
RPF1YHR088W RRB1Q04225 511 aaKnown RBP1.64□□□□□ -2.15
RPF1YHR088W GTO3Q04806 366 aa1.64□□□□□ -2.15
RPF1YHR088W YPL264CQ08980 353 aa1.64□□□□□ -2.15
RPF1YHR088W PSO2P30620 661 aa1.63□□□□□ -2.15
RPF1YHR088W YBL081WP38180 368 aaKnown RBP1.63□□□□□ -2.15
RPF1YHR088W YBL028CP38202 106 aa1.63□□□□□ -2.15
RPF1YHR088W LCB2P40970 561 aa1.63□□□□□ -2.15
RPF1YHR088W LST7P53237 242 aa1.63□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 20.9 ms