RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FTSJ1	Q9UET6	329 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PRSS50	Q9UI38	385 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CROT	Q9UKG9	612 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	CNOT6	Q9ULM6	557 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	SMG5	Q9UPR3	1016 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	RNF114	Q9Y508	228 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA9	Q9Y5G4	932 aa	Known RBP	5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA8	Q9Y5G5	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA7	Q9Y5G6	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA6	Q9Y5G7	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA3	Q9Y5H0	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHGA2	Q9Y5H1	932 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	MRFAP1	Q9Y605	127 aa		5.14	□□□□□ -1.59
PTCD3-209	ENST00000472044	KLHL33	A6NCF5	533 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	TCAF2	A6NFQ2	919 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044		H0Y858	1186 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	PAX4	O43316	350 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	RFPL1	O75677	317 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	KLHL18	O94889	574 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	C1QTNF9	P0C862	333 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	AGXT	P21549	392 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	RECQL	P46063	649 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	TRIM25	Q14258	630 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	DGKD	Q16760	1214 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	ANO4	Q32M45	955 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF385B	Q569K4	471 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	OGFOD2	Q6N063	350 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	BCL6B	Q8N143	479 aa	Predicted RBP	5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	CDYL2	Q8N8U2	506 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	OR14C36	Q8NHC7	312 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	PPP1R14C	Q8TAE6	165 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	TGFBRAP1	Q8WUH2	860 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	AUTS2	Q8WXX7	1259 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZCCHC14	Q8WYQ9	949 aa	Known RBP	5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	PWWP2A	Q96N64	755 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	SLC38A3	Q99624	504 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	CDH19	Q9H159	772 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	AASDHPPT	Q9NRN7	309 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	DNAJC28	Q9NX36	388 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	TCEAL9	Q9UHQ7	104 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044	KCTD3	Q9Y597	815 aa		5.13	□□□□□ -1.59
PTCD3-209	ENST00000472044		A0A0G2JNJ9	132 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	MARCH6	O60337	910 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	LPL	P06858	475 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	PI3	P19957	117 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	CCND1	P24385	295 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	POLD1	P28340	1107 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	SLC5A3	P53794	718 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	TOP3A	Q13472	1001 aa	Predicted RBP	5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	EIF4H	Q15056	248 aa	Known RBP	5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	MUM1	Q2TAK8	710 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	WDR72	Q3MJ13	1102 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	TOR2A	Q5JU69	321 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	CPA6	Q8N4T0	437 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	OR5AN1	Q8NGI8	311 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	DACT3	Q96B18	629 aa	Predicted RBP	5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	HIST1H2AH	Q96KK5	128 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	HIST1H2AJ	Q99878	128 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	KCTD10	Q9H3F6	313 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	PRDM12	Q9H4Q4	367 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	NTM	Q9P121	344 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	CHPF2	Q9P2E5	772 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044		Q9UFV3	132 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDHB6	Q9Y5E3	794 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	GPR45	Q9Y5Y3	372 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	CDY2A	Q9Y6F7	541 aa		5.12	□□□□□ -1.59
PTCD3-209	ENST00000472044	RFXAP	O00287	272 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	SEC24D	O94855	1032 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	SNUPN	O95149	360 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	PCDH8	O95206	1070 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	LGALS4	P56470	323 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	ANTXR2	P58335	489 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	SRSF2	Q01130	221 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	SPIDR	Q14159	915 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	ODF1	Q14990	250 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	KCNA10	Q16322	511 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	LCE3B	Q5TA77	95 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	TRMT10B	Q6PF06	316 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	PNMA8A	Q86V59	439 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZNF526	Q8TF50	670 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	GAB3	Q8WWW8	586 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	JADE3	Q92613	823 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	YTHDC1	Q96MU7	727 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	NOL10	Q9BSC4	688 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	RTFDC1	Q9BY42	306 aa	Predicted RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	RHOBTB2	Q9BYZ6	727 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	OSBPL6	Q9BZF3	934 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	KATNBL1	Q9H079	304 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	QRSL1	Q9H0R6	528 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZIM2	Q9NZV7	527 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	SYNPO2	Q9UMS6	1093 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	EDAR	Q9UNE0	448 aa		5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044	LUC7L2	Q9Y383	392 aa	Known RBP	5.11	□□□□□ -1.59
PTCD3-209	ENST00000472044		A0A0A6YYK5	440 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	FFAR3	O14843	346 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	TSPAN6	O43657	245 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	NRP2	O60462	931 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	CELA3B	P08861	270 aa		5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	ZSCAN20	P17040	1043 aa	Predicted RBP	5.1	□□□□□ -1.59
PTCD3-209	ENST00000472044	VCAM1	P19320	739 aa		5.1	□□□□□ -1.59

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