RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.14	■□□□□ 0.49
PTCD3-209	ENST00000472044	CHIC1	Q5VXU3	224 aa		18.01	■□□□□ 0.47
PTCD3-209	ENST00000472044	PHF23	Q9BUL5	403 aa	Predicted RBP	15.86	■□□□□ 0.13
PTCD3-209	ENST00000472044	SENP3	Q9H4L4	574 aa	Predicted RBP	15.37	■□□□□ 0.05
PTCD3-209	ENST00000472044	PLPPR3	Q6T4P5	718 aa		14.75	□□□□□ -0.05
PTCD3-209	ENST00000472044	FOXD1	Q16676	465 aa		14.21	□□□□□ -0.13
PTCD3-209	ENST00000472044	PPP6R1	Q9UPN7	881 aa		13.89	□□□□□ -0.19
PTCD3-209	ENST00000472044	ADRA2B	P18089	450 aa		13.87	□□□□□ -0.19
PTCD3-209	ENST00000472044	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.44	□□□□□ -0.26
PTCD3-209	ENST00000472044	MSH5	O43196	834 aa		13.02	□□□□□ -0.33
PTCD3-209	ENST00000472044	PPP4R3CP	Q6ZMV5	832 aa		13.01	□□□□□ -0.33
PTCD3-209	ENST00000472044	KCNA4	P22459	653 aa		13	□□□□□ -0.33
PTCD3-209	ENST00000472044	POTED	Q86YR6	584 aa		12.84	□□□□□ -0.35
PTCD3-209	ENST00000472044	NCBP3	Q53F19	620 aa	Known RBP	12.76	□□□□□ -0.37
PTCD3-209	ENST00000472044	SCAF1	Q9H7N4	1312 aa	Known RBP	12.73	□□□□□ -0.37
PTCD3-209	ENST00000472044	CNKSR2	Q8WXI2	1034 aa		12.61	□□□□□ -0.39
PTCD3-209	ENST00000472044	NPM3	O75607	178 aa	Known RBP	12.56	□□□□□ -0.4
PTCD3-209	ENST00000472044	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.5	□□□□□ -0.41
PTCD3-209	ENST00000472044	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.43	□□□□□ -0.42
PTCD3-209	ENST00000472044	EHMT2	Q96KQ7	1210 aa		12.32	□□□□□ -0.44
PTCD3-209	ENST00000472044	DMRT2	Q9Y5R5	561 aa		12.32	□□□□□ -0.44
PTCD3-209	ENST00000472044	RNF216	Q9NWF9	866 aa	Predicted RBP	12.3	□□□□□ -0.44
PTCD3-209	ENST00000472044	DNAJC5B	Q9UF47	199 aa		12.28	□□□□□ -0.44
PTCD3-209	ENST00000472044	HOXD11	P31277	338 aa	Predicted RBP	12.19	□□□□□ -0.46
PTCD3-209	ENST00000472044	CSRNP3	Q8WYN3	585 aa		12.15	□□□□□ -0.46
PTCD3-209	ENST00000472044	ZBTB22	O15209	634 aa		11.96	□□□□□ -0.49
PTCD3-209	ENST00000472044	FOXD4L1	Q9NU39	408 aa		11.91	□□□□□ -0.5
PTCD3-209	ENST00000472044	SLC4A2	P04920	1241 aa		11.8	□□□□□ -0.52
PTCD3-209	ENST00000472044	DCAF8L1	A6NGE4	600 aa		11.67	□□□□□ -0.54
PTCD3-209	ENST00000472044	MYCN	P04198	464 aa	Predicted RBP	11.62	□□□□□ -0.55
PTCD3-209	ENST00000472044	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.54	□□□□□ -0.56	7e-11	■■□□□ 11.9
PTCD3-209	ENST00000472044	ATXN8OS	P0DMR3	200 aa		11.52	□□□□□ -0.57
PTCD3-209	ENST00000472044		U3KPZ7	1027 aa	Predicted RBP	11.42	□□□□□ -0.58
PTCD3-209	ENST00000472044	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.4	□□□□□ -0.58
PTCD3-209	ENST00000472044	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.4	□□□□□ -0.58
PTCD3-209	ENST00000472044	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.36	□□□□□ -0.59
PTCD3-209	ENST00000472044	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.25	□□□□□ -0.61
PTCD3-209	ENST00000472044	APLP2	Q06481	763 aa		11.21	□□□□□ -0.61
PTCD3-209	ENST00000472044	RNF39	Q9H2S5	420 aa		11.18	□□□□□ -0.62
PTCD3-209	ENST00000472044	CACNB1	Q02641	598 aa	Predicted RBP	11.12	□□□□□ -0.63
PTCD3-209	ENST00000472044	C1QBP	Q07021	282 aa	Known RBP	11.08	□□□□□ -0.64
PTCD3-209	ENST00000472044	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.06	□□□□□ -0.64
PTCD3-209	ENST00000472044	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.99	□□□□□ -0.65
PTCD3-209	ENST00000472044	TRH	P20396	242 aa	Predicted RBP	10.93	□□□□□ -0.66
PTCD3-209	ENST00000472044	CAPN15	O75808	1086 aa		10.92	□□□□□ -0.66
PTCD3-209	ENST00000472044	FKBP8	Q14318	412 aa		10.92	□□□□□ -0.66
PTCD3-209	ENST00000472044	POLA2	Q14181	598 aa		10.84	□□□□□ -0.67
PTCD3-209	ENST00000472044	MKRN4P	Q13434	485 aa	Predicted RBP	10.79	□□□□□ -0.68
PTCD3-209	ENST00000472044	FBLN2	P98095	1184 aa		10.77	□□□□□ -0.69
PTCD3-209	ENST00000472044	DSG3	P32926	999 aa		10.73	□□□□□ -0.69
PTCD3-209	ENST00000472044	ABCB7	O75027	752 aa		10.72	□□□□□ -0.69
PTCD3-209	ENST00000472044	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.72	□□□□□ -0.69
PTCD3-209	ENST00000472044	SPDYE4	A6NLX3	237 aa		10.67	□□□□□ -0.7
PTCD3-209	ENST00000472044	PROM2	Q8N271	834 aa		10.61	□□□□□ -0.71
PTCD3-209	ENST00000472044	FBXO3	Q9UK99	471 aa		10.51	□□□□□ -0.73
PTCD3-209	ENST00000472044	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.48	□□□□□ -0.73
PTCD3-209	ENST00000472044	SPDYE2B	A6NHP3	402 aa		10.47	□□□□□ -0.73
PTCD3-209	ENST00000472044	SPDYE6	P0CI01	402 aa		10.47	□□□□□ -0.73
PTCD3-209	ENST00000472044	SPDYE2	Q495Y8	402 aa		10.47	□□□□□ -0.73
PTCD3-209	ENST00000472044	OSCAR	Q8IYS5	282 aa		10.45	□□□□□ -0.74
PTCD3-209	ENST00000472044	ZNF692	Q9BU19	519 aa	Predicted RBP	10.43	□□□□□ -0.74
PTCD3-209	ENST00000472044	SSUH2	Q9Y2M2	353 aa		10.42	□□□□□ -0.74
PTCD3-209	ENST00000472044	RTN4	Q9NQC3	1192 aa	Known RBP	10.41	□□□□□ -0.74
PTCD3-209	ENST00000472044	VASP	P50552	380 aa	Predicted RBP	10.33	□□□□□ -0.76
PTCD3-209	ENST00000472044	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
PTCD3-209	ENST00000472044	STAG3	Q9UJ98	1225 aa		10.27	□□□□□ -0.77
PTCD3-209	ENST00000472044	RBM42	Q9BTD8	480 aa	Known RBP	10.23	□□□□□ -0.77
PTCD3-209	ENST00000472044	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.22	□□□□□ -0.77
PTCD3-209	ENST00000472044	AKT1S1	Q96B36	256 aa		10.17	□□□□□ -0.78
PTCD3-209	ENST00000472044	PLCD3	Q8N3E9	789 aa		10.08	□□□□□ -0.8
PTCD3-209	ENST00000472044	MIER1	Q8N108	512 aa		10.07	□□□□□ -0.8
PTCD3-209	ENST00000472044	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.07	□□□□□ -0.8
PTCD3-209	ENST00000472044	KLHL34	Q8N239	644 aa		10.05	□□□□□ -0.8
PTCD3-209	ENST00000472044	SPOCK2	Q92563	424 aa		10.05	□□□□□ -0.8
PTCD3-209	ENST00000472044	REM2	Q8IYK8	340 aa	Predicted RBP	10.04	□□□□□ -0.8
PTCD3-209	ENST00000472044	POTEH	Q6S545	545 aa		10.03	□□□□□ -0.8
PTCD3-209	ENST00000472044	PLEKHG5	O94827	1062 aa		10.02	□□□□□ -0.81
PTCD3-209	ENST00000472044	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.01	□□□□□ -0.81
PTCD3-209	ENST00000472044	PKD2	Q13563	968 aa		9.99	□□□□□ -0.81
PTCD3-209	ENST00000472044	CLEC11A	Q9Y240	323 aa		9.96	□□□□□ -0.82
PTCD3-209	ENST00000472044	PRR29	P0C7W0	189 aa		9.94	□□□□□ -0.82
PTCD3-209	ENST00000472044	PITPNM1	O00562	1244 aa		9.9	□□□□□ -0.82
PTCD3-209	ENST00000472044	CREBZF	Q9NS37	354 aa		9.9	□□□□□ -0.82
PTCD3-209	ENST00000472044	SLC24A1	O60721	1099 aa		9.86	□□□□□ -0.83
PTCD3-209	ENST00000472044	MNX1	P50219	401 aa	Predicted RBP	9.85	□□□□□ -0.83
PTCD3-209	ENST00000472044	ECM2	O94769	699 aa	Predicted RBP	9.84	□□□□□ -0.83
PTCD3-209	ENST00000472044	NUBP1	P53384	320 aa		9.83	□□□□□ -0.84
PTCD3-209	ENST00000472044	TRIM41	Q8WV44	630 aa		9.81	□□□□□ -0.84
PTCD3-209	ENST00000472044	CIZ1	Q9ULV3	898 aa	Predicted RBP	9.8	□□□□□ -0.84
PTCD3-209	ENST00000472044	GSE1	Q14687	1217 aa		9.79	□□□□□ -0.84
PTCD3-209	ENST00000472044	DCAF8L2	P0C7V8	631 aa		9.75	□□□□□ -0.85
PTCD3-209	ENST00000472044	RGL2	O15211	777 aa		9.74	□□□□□ -0.85
PTCD3-209	ENST00000472044	NPM1	P06748	294 aa	Known RBP eCLIP	9.74	□□□□□ -0.85
PTCD3-209	ENST00000472044	DCAF8	Q5TAQ9	597 aa		9.72	□□□□□ -0.85
PTCD3-209	ENST00000472044	FAM212A	Q96EL1	285 aa		9.72	□□□□□ -0.85
PTCD3-209	ENST00000472044	FXR2	P51116	673 aa	Known RBP eCLIP	9.71	□□□□□ -0.86
PTCD3-209	ENST00000472044	CHADL	Q6NUI6	762 aa		9.69	□□□□□ -0.86
PTCD3-209	ENST00000472044	RASEF	Q8IZ41	740 aa		9.69	□□□□□ -0.86
PTCD3-209	ENST00000472044	PLCB2	Q00722	1185 aa		9.68	□□□□□ -0.86
PTCD3-209	ENST00000472044	CHRM1	P11229	460 aa	Predicted RBP	9.67	□□□□□ -0.86

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