RNA–Protein interactions for RNA: YNL079C

TPM1, Transcript of Major isoform of tropomyosin, yeast

Gene TPM1, Length 600 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM1	YNL079C	RKM5	Q12367	367 aa		3.35	□□□□□ -1.87
TPM1	YNL079C	NMT1	P14743	455 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	NSP1	P14907	823 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	MTF1	P14908	341 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	SPB1	P25582	841 aa	Predicted RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	YCR022C	P25620	114 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	BEM1	P29366	551 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	KAR9	P32526	644 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	SWH1	P35845	1188 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	FMP46	P36141	133 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	TRM5	P38793	499 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	RIO2	P40160	425 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	MMF1	P40185	145 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	JEM1	P40358	645 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	POP1	P41812	875 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	BUD13	P46947	266 aa	Predicted RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	NUP84	P52891	726 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	AIF1	P52923	378 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	CUS2	P53830	285 aa	Predicted RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	SLM2	P53955	656 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	PNG1	Q02890	363 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	HOT1	Q03213	719 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	ACL4	Q03771	387 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	RPN9	Q04062	393 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	ERP1	Q05359	219 aa	Known RBP	3.34	□□□□□ -1.87
TPM1	YNL079C	SEC10	Q06245	871 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	VPS74	Q06385	345 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	YLR012C	Q07927	99 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	RMD5	Q12508	421 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	YMR230W-A	Q3E7B5	62 aa		3.34	□□□□□ -1.87
TPM1	YNL079C	STE2	D6VTK4	431 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	RPL24A	P04449	155 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	FUR1	P18562	216 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	RPB4	P20433	221 aa	Predicted RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	YCR090C	P25654	182 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	BUB3	P26449	341 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	FUN19	P28003	413 aa	Predicted RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	AFG1	P32317	509 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	AEP1	P32493	518 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	IMP3	P32899	183 aa	Predicted RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	SGE1	P33335	543 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	MRPL40	P36534	297 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	MAK5	P38112	773 aa	Predicted RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	MTC4	P38335	694 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	YHR131C	P38835	850 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	HAT2	P39984	401 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	LSM5	P40089	93 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	FAU1	P40099	211 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	MAM33	P40513	266 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YIL001W	P40560	513 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	RPR2	P40571	144 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YGR149W	P48236	432 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	BOL2	P53082	120 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YGR250C	P53316	781 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	COS6	P53344	381 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YNL010W	P53981	241 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	LSM3	P57743	89 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	SPP2	Q02521	185 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YDR476C	Q03362	224 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YDR131C	Q03899	556 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YET2	Q04210	160 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	RTN1	Q04947	295 aa	Known RBP	3.33	□□□□□ -1.88
TPM1	YNL079C	FAR10	Q06001	478 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	VTA1	Q06263	330 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	BCP1	Q06338	283 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
TPM1	YNL079C	YOL019W	Q08157	551 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YOR387C	Q08910	206 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	YPQ1	Q12010	308 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	MDY2	Q12285	212 aa		3.33	□□□□□ -1.88
TPM1	YNL079C	HEM2	P05373	342 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	GCD2	P12754	651 aa	Predicted RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	RPL3	P14126	387 aa	Known RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	MRPL8	P22353	238 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	PPH22	P23595	377 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	DCC1	P25559	380 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	YCR099C	P25657	155 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	ZIP1	P31111	875 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	PTM1	P32857	523 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	THI2	P38141	450 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	SRP72	P38688	640 aa	Known RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	MDM31	P38880	579 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	RPH1	P39956	796 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	SHO1	P40073	367 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	COA1	P40452	197 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	GCD14	P46959	383 aa	Predicted RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	COS10	P52924	374 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	NOP19	P53317	196 aa	Predicted RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	PRO2	P54885	456 aa	Known RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	REX2	P54964	269 aa	Known RBP	3.32	□□□□□ -1.88
TPM1	YNL079C	RMI1	Q02685	241 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	NHP10	Q03435	203 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	SPC19	Q03954	165 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	ESA1	Q08649	445 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	AYT1	Q12226	474 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	RUP1	Q12242	671 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	ATG34	Q12292	412 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	YPL247C	Q12523	523 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	SET6	Q12529	373 aa		3.32	□□□□□ -1.88
TPM1	YNL079C	SPS4	P09937	338 aa		3.31	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms