RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	CIN1	P40987	1014 aa		14.18	□□□□□ -0.14
CCC1	YLR220W	BAT2	P47176	376 aa	Known RBP	14.18	□□□□□ -0.14
CCC1	YLR220W	LSG1	P53145	640 aa	Known RBP	14.18	□□□□□ -0.14
CCC1	YLR220W	DCR2	Q05924	578 aa		14.18	□□□□□ -0.14
CCC1	YLR220W	SEI1	Q06058	285 aa		14.18	□□□□□ -0.14
CCC1	YLR220W	DET1	Q99288	334 aa	Known RBP	14.18	□□□□□ -0.14
CCC1	YLR220W	YCR100C	P25606	316 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	HBS1	P32769	611 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	SEC61	P32915	480 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	AHP1	P38013	176 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	RRP4	P38792	359 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	CTF8	P38877	133 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	IRC6	P43615	237 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	RHO5	P53879	331 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	ATG21	Q02887	496 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	NUP53	Q03790	475 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	SEC13	Q04491	297 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	ERB1	Q04660	807 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	NOP12	Q08208	459 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	APC2	Q12440	853 aa		14.17	□□□□□ -0.14
CCC1	YLR220W	GLT1	Q12680	2145 aa	Known RBP	14.17	□□□□□ -0.14
CCC1	YLR220W	TFS1	P14306	219 aa		14.16	□□□□□ -0.14
CCC1	YLR220W	PRP19	P32523	503 aa	Known RBP	14.16	□□□□□ -0.14
CCC1	YLR220W	CHA4	P43634	648 aa		14.16	□□□□□ -0.14
CCC1	YLR220W	YGL235W	P53071	178 aa		14.16	□□□□□ -0.14
CCC1	YLR220W	YKR011C	Q02209	353 aa		14.16	□□□□□ -0.14
CCC1	YLR220W	SKI7	Q08491	747 aa	Predicted RBP	14.16	□□□□□ -0.14
CCC1	YLR220W	NPC2	Q12408	173 aa		14.16	□□□□□ -0.14
CCC1	YLR220W	ADE5,7	P07244	802 aa	Known RBP	14.15	□□□□□ -0.14
CCC1	YLR220W	HSP150	P32478	413 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	OM14	P38325	134 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	ISC1	P40015	477 aa	Known RBP	14.15	□□□□□ -0.14
CCC1	YLR220W	GCN20	P43535	752 aa	Known RBP	14.15	□□□□□ -0.14
CCC1	YLR220W	CUZ1	P53899	274 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	RSN1	Q03516	953 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	SMP3	Q04174	516 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	YLR446W	Q06204	433 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	MHF1	Q3E835	90 aa		14.15	□□□□□ -0.14
CCC1	YLR220W	YCR102C	P25608	368 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	NAM9	P27929	486 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	PDS1	P40316	373 aa	Predicted RBP	14.14	□□□□□ -0.15
CCC1	YLR220W	EMC2	P47133	292 aa	Known RBP	14.14	□□□□□ -0.15
CCC1	YLR220W	HMS2	P47175	358 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	EXG2	P52911	562 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	ABZ2	Q03266	374 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	CGI121	Q03705	181 aa	Known RBP	14.14	□□□□□ -0.15
CCC1	YLR220W	SYO1	Q07395	620 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	CYK3	Q07533	885 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	DFG16	Q99234	619 aa		14.14	□□□□□ -0.15
CCC1	YLR220W	CAR2	P07991	424 aa	Known RBP	14.13	□□□□□ -0.15
CCC1	YLR220W	NCP1	P16603	691 aa	Known RBP	14.13	□□□□□ -0.15
CCC1	YLR220W	MCM7	P38132	845 aa		14.13	□□□□□ -0.15
CCC1	YLR220W	PKP1	P40530	394 aa		14.13	□□□□□ -0.15
CCC1	YLR220W	LEM3	P42838	414 aa		14.13	□□□□□ -0.15
CCC1	YLR220W	YOL162W	P0CF19	215 aa		14.12	□□□□□ -0.15
CCC1	YLR220W	ERD1	P16151	362 aa		14.12	□□□□□ -0.15
CCC1	YLR220W	ERD2	P18414	219 aa		14.12	□□□□□ -0.15
CCC1	YLR220W	SSE2	P32590	693 aa	Known RBP	14.12	□□□□□ -0.15
CCC1	YLR220W	YDR209C	Q03480	137 aa		14.12	□□□□□ -0.15
CCC1	YLR220W	MCP1	Q12106	302 aa		14.12	□□□□□ -0.15
CCC1	YLR220W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	14.12	□□□□□ -0.15	not detected
CCC1	YLR220W	TPK3	P05986	398 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	DPM1	P14020	267 aa	Known RBP	14.11	□□□□□ -0.15
CCC1	YLR220W	BUD5	P25300	642 aa	Predicted RBP	14.11	□□□□□ -0.15
CCC1	YLR220W	LYP1	P32487	611 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	AST2	P39945	430 aa	Known RBP	14.11	□□□□□ -0.15
CCC1	YLR220W	YNL208W	P40159	199 aa	Known RBP	14.11	□□□□□ -0.15
CCC1	YLR220W	SNF12	P53628	566 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	PFA5	Q03289	374 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	YPR127W	Q06494	345 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	AVO1	Q08236	1176 aa		14.11	□□□□□ -0.15
CCC1	YLR220W	RRG9	P40156	214 aa		14.1	□□□□□ -0.15
CCC1	YLR220W	YIL166C	P40445	542 aa		14.1	□□□□□ -0.15
CCC1	YLR220W	SEC24	P40482	926 aa	Known RBP	14.1	□□□□□ -0.15
CCC1	YLR220W	HOL1	P53389	586 aa		14.1	□□□□□ -0.15
CCC1	YLR220W	EKI1	Q03764	534 aa		14.1	□□□□□ -0.15
CCC1	YLR220W	PLM2	Q04383	521 aa		14.1	□□□□□ -0.15
CCC1	YLR220W	SNC1	P31109	117 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	PRP21	P32524	280 aa	Predicted RBP	14.09	□□□□□ -0.15
CCC1	YLR220W	TIM12	P32830	109 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	TIF3	P34167	436 aa	Known RBP	14.09	□□□□□ -0.15
CCC1	YLR220W	YFR054C	P43622	192 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	ASI1	P54074	624 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	ENB1	Q08299	606 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	HNT3	Q08702	217 aa		14.09	□□□□□ -0.15
CCC1	YLR220W	RRG7	Q08774	242 aa	Predicted RBP	14.09	□□□□□ -0.15
CCC1	YLR220W	ARC19	P33204	171 aa	Known RBP	14.08	□□□□□ -0.16
CCC1	YLR220W	LHS1	P36016	881 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	YKR073C	P36153	106 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	MTC4	P38335	694 aa	Known RBP	14.08	□□□□□ -0.16
CCC1	YLR220W	STS1	P38637	319 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	SBE22	P38814	852 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	EGD2	P38879	174 aa	Known RBP	14.08	□□□□□ -0.16
CCC1	YLR220W	SKN7	P38889	622 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	YJL193W	P39542	402 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	SOP4	P39543	234 aa	Predicted RBP	14.08	□□□□□ -0.16
CCC1	YLR220W	SOK1	P40317	901 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	HXT9	P40885	567 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	IDS2	P46958	469 aa		14.08	□□□□□ -0.16
CCC1	YLR220W	RPE1	P46969	238 aa		14.08	□□□□□ -0.16

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms