RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W VHS1Q03785 461 aa1.09□□□□□ -2.23
CDC39YCR093W RGC1Q06108 1083 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W NDD1Q08887 554 aa1.09□□□□□ -2.23
CDC39YCR093W YRM1Q12340 786 aa1.09□□□□□ -2.23
CDC39YCR093W SPE4Q12455 300 aa1.09□□□□□ -2.23
CDC39YCR093W RIM15P43565 1770 aa1.09□□□□□ -2.23
CDC39YCR093W ATP11P32453 318 aa1.09□□□□□ -2.23
CDC39YCR093W MID2P36027 376 aa1.09□□□□□ -2.23
CDC39YCR093W ASC1P38011 319 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W MIX23P38162 196 aa1.09□□□□□ -2.23
CDC39YCR093W MNL1P38888 796 aa1.09□□□□□ -2.23
CDC39YCR093W SHE10P53075 577 aa1.09□□□□□ -2.23
CDC39YCR093W BNI5P53890 448 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W UBA3Q99344 299 aa1.09□□□□□ -2.23
CDC39YCR093W FAS2P19097 1887 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W PDR5P33302 1511 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W CAT8P39113 1433 aa1.09□□□□□ -2.23
CDC39YCR093W YPT1P01123 206 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W YEL043WP32618 956 aa1.09□□□□□ -2.23
CDC39YCR093W PMU1P36069 295 aa1.09□□□□□ -2.23
CDC39YCR093W FMP46P36141 133 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W CHK1P38147 527 aa1.09□□□□□ -2.23
CDC39YCR093W YHI9P38765 294 aa1.09□□□□□ -2.23
CDC39YCR093W BUD13P46947 266 aaPredicted RBP1.09□□□□□ -2.23
CDC39YCR093W CUE3P53137 624 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W PKP2P53170 491 aa1.09□□□□□ -2.23
CDC39YCR093W SLT2Q00772 484 aa1.09□□□□□ -2.23
CDC39YCR093W RLI1Q03195 608 aaKnown RBP1.09□□□□□ -2.23
CDC39YCR093W GPN3Q06543 272 aa1.09□□□□□ -2.23
CDC39YCR093W CIR2Q08822 631 aa1.09□□□□□ -2.23
CDC39YCR093W RPL15AP05748 204 aaKnown RBP1.09□□□□□ -2.24
CDC39YCR093W RAD52P06778 471 aaKnown RBP1.09□□□□□ -2.24
CDC39YCR093W RAD7P06779 565 aa1.09□□□□□ -2.24
CDC39YCR093W PHO2P07269 559 aa1.09□□□□□ -2.24
CDC39YCR093W GLN3P18494 730 aa1.09□□□□□ -2.24
CDC39YCR093W THI2P38141 450 aa1.09□□□□□ -2.24
CDC39YCR093W SMF2P38778 549 aa1.09□□□□□ -2.24
CDC39YCR093W LIN1P38852 340 aaPredicted RBP1.09□□□□□ -2.24
CDC39YCR093W VPS45P38932 577 aa1.09□□□□□ -2.24
CDC39YCR093W PET100P38958 111 aa1.09□□□□□ -2.24
CDC39YCR093W END3P39013 349 aa1.09□□□□□ -2.24
CDC39YCR093W RBG1P39729 369 aa1.09□□□□□ -2.24
CDC39YCR093W CCE1Q03702 353 aa1.09□□□□□ -2.24
CDC39YCR093W MMR1Q06324 491 aa1.09□□□□□ -2.24
CDC39YCR093W YPL272CQ08984 517 aa1.09□□□□□ -2.24
CDC39YCR093W YPR1Q12458 312 aa1.09□□□□□ -2.24
CDC39YCR093W APC1P53886 1748 aa1.09□□□□□ -2.24
CDC39YCR093W YER145C-AA0A023PYF4 145 aa1.09□□□□□ -2.24
CDC39YCR093W RPL24AP04449 155 aaKnown RBP1.09□□□□□ -2.24
CDC39YCR093W HEM2P05373 342 aa1.09□□□□□ -2.24
CDC39YCR093W EPT1P22140 391 aa1.09□□□□□ -2.24
CDC39YCR093W RDS1P25611 832 aa1.09□□□□□ -2.24
CDC39YCR093W RGT1P32862 1170 aa1.09□□□□□ -2.24
CDC39YCR093W GUF1P46943 645 aa1.09□□□□□ -2.24
CDC39YCR093W URH1Q04179 340 aa1.09□□□□□ -2.24
CDC39YCR093W YPR091CQ06833 770 aa1.09□□□□□ -2.24
CDC39YCR093W SIL1Q08199 421 aa1.09□□□□□ -2.24
CDC39YCR093W YPR022CQ12139 1133 aa1.09□□□□□ -2.24
CDC39YCR093W YPL150WQ12152 901 aa1.09□□□□□ -2.24
CDC39YCR093W NFT1P0CE68 1218 aa1.08□□□□□ -2.24
CDC39YCR093W NAT1P12945 854 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W ALG1P16661 449 aa1.08□□□□□ -2.24
CDC39YCR093W TPS2P31688 896 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W ZRT1P32804 376 aa1.08□□□□□ -2.24
CDC39YCR093W ECM8P38246 354 aa1.08□□□□□ -2.24
CDC39YCR093W MLH1P38920 769 aa1.08□□□□□ -2.24
CDC39YCR093W TES1P41903 349 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W NCA3P46955 337 aa1.08□□□□□ -2.24
CDC39YCR093W YIP5P53108 310 aa1.08□□□□□ -2.24
CDC39YCR093W RRT6P53117 311 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W YMR087WQ04299 284 aa1.08□□□□□ -2.24
CDC39YCR093W YMR317WQ04893 1140 aa1.08□□□□□ -2.24
CDC39YCR093W NDL1Q06568 189 aa1.08□□□□□ -2.24
CDC39YCR093W RPS10AQ08745 105 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W YPQ1Q12010 308 aa1.08□□□□□ -2.24
CDC39YCR093W ARF2P19146 181 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W CTR86P25355 563 aa1.08□□□□□ -2.24
CDC39YCR093W SKN1P33336 771 aa1.08□□□□□ -2.24
CDC39YCR093W SSO2P39926 295 aa1.08□□□□□ -2.24
CDC39YCR093W YDL186WP48568 277 aa1.08□□□□□ -2.24
CDC39YCR093W BUR2Q05949 395 aa1.08□□□□□ -2.24
CDC39YCR093W HNT3Q08702 217 aa1.08□□□□□ -2.24
CDC39YCR093W RPL42AP0CX27 106 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W RPL42BP0CX28 106 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W RVS161P25343 265 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W INO2P26798 304 aa1.08□□□□□ -2.24
CDC39YCR093W ERG9P29704 444 aa1.08□□□□□ -2.24
CDC39YCR093W IES6P32617 166 aa1.08□□□□□ -2.24
CDC39YCR093W CBF5P33322 483 aaKnown RBP RIP-Chip data1.08□□□□□ -2.24not detected
CDC39YCR093W QDR3P38227 689 aa1.08□□□□□ -2.24
CDC39YCR093W PFF1P38244 976 aa1.08□□□□□ -2.24
CDC39YCR093W VPS41P38959 992 aa1.08□□□□□ -2.24
CDC39YCR093W DHH1P39517 506 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W YGR210CP42942 411 aa1.08□□□□□ -2.24
CDC39YCR093W STE24P47154 453 aa1.08□□□□□ -2.24
CDC39YCR093W YNL143CP53908 130 aa1.08□□□□□ -2.24
CDC39YCR093W DNL4Q08387 944 aaPredicted RBP1.08□□□□□ -2.24
CDC39YCR093W GDH1P07262 454 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W RPL12AP0CX53 165 aaKnown RBP1.08□□□□□ -2.24
CDC39YCR093W RPL12BP0CX54 165 aa1.08□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 19.5 ms