RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 MFSD1Q9H3U5 465 aa13.66□□□□□ -0.22
VPS9D1-207ENST00000568691 VAT1LQ9HCJ6 419 aa13.66□□□□□ -0.22
VPS9D1-207ENST00000568691 TYW1Q9NV66 732 aaKnown RBP13.66□□□□□ -0.22
VPS9D1-207ENST00000568691 TMEM260Q9NX78 707 aa13.66□□□□□ -0.22
VPS9D1-207ENST00000568691 CIZ1Q9ULV3 898 aaPredicted RBP13.66□□□□□ -0.22
VPS9D1-207ENST00000568691 NEDD4P46934 1319 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 NOP56O00567 594 aaKnown RBP13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 ANKRD1Q15327 319 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 GRIK4Q16099 956 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 IMMTQ16891 758 aaKnown RBP13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 RSPO4Q2I0M5 234 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 BLOC1S2Q6QNY1 142 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 STAG2Q8N3U4 1231 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 C12orf76Q8N812 135 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 PNMA1Q8ND90 353 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 KCNG4Q8TDN1 519 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 TUBE1Q9UJT0 475 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 HCFC2Q9Y5Z7 792 aa13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 FNDC1Q4ZHG4 1894 aaPredicted RBP13.65□□□□□ -0.22
VPS9D1-207ENST00000568691 FRMPD4Q14CM0 1322 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 CYP21A2P08686 494 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 STAG3L1P0CL83 205 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 CCND2P30279 289 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 SP4Q02446 784 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 TMEM62Q0P6H9 643 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 PPFIA1Q13136 1202 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 TMEM266Q2M3C6 531 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 PDE12Q6L8Q7 609 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 LRRC55Q6ZSA7 311 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 DGKHQ86XP1 1220 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 RIN2Q8WYP3 895 aaPredicted RBP13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 MRPS27Q92552 414 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 INTS4Q96HW7 963 aaKnown RBP13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 TCF25Q9BQ70 676 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 SEMA4AQ9H3S1 761 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 LZTS1Q9Y250 596 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 PCDHB12Q9Y5F1 795 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 TCHHQ07283 1943 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 IGSF9BQ9UPX0 1349 aa13.64□□□□□ -0.23
VPS9D1-207ENST00000568691 GSTTP1A0A1W2PQM5 241 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 FSD2A1L4K1 749 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 KRBA1A5PL33 1030 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 TBKBP1A7MCY6 615 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 HSP90AA1P07900 732 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 RPS6KB1P23443 525 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 MARK3P27448 753 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 PBX3P40426 434 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 SARSP49591 514 aaKnown RBP13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 PLCB3Q01970 1234 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 CUL4AQ13619 759 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 ADCK5Q3MIX3 580 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 THNSL1Q8IYQ7 743 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 FBXL16Q8N461 479 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 SUMF1Q8NBK3 374 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 NECTIN4Q96NY8 510 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 AMNQ9BXJ7 453 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 FTHL17Q9BXU8 183 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 FAM49AQ9H0Q0 323 aaPredicted RBP13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 SH2B1Q9NRF2 756 aaPredicted RBP13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 RNF19AQ9NV58 838 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 RTEL1Q9NZ71 1219 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 ZNF215Q9UL58 517 aaPredicted RBP13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 SQORQ9Y6N5 450 aa13.63□□□□□ -0.23
VPS9D1-207ENST00000568691 C9IYK1 514 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 NARSO43776 548 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 ATP9AO75110 1047 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 CLASP2O75122 1294 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 FGFR1P11362 822 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 IBSPP21815 317 aaPredicted RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 DDIT3P35638 169 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 TCF7P36402 384 aaPredicted RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 NT5C2P49902 561 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 ITIH3Q06033 890 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 NEDD9Q14511 834 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 ASPRV1Q53RT3 343 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 FCHSD1Q86WN1 690 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 SIX5Q8N196 739 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 TDRD5Q8NAT2 981 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 CASP10Q92851 521 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 ZSCAN31Q96LW9 406 aaPredicted RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 PCYT2Q99447 389 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 CDHR5Q9HBB8 845 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 PDRG1Q9NUG6 133 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 MAP3K20Q9NYL2 800 aaKnown RBP13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 DLGAP2Q9P1A6 1054 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 TRPV2Q9Y5S1 764 aa13.62□□□□□ -0.23
VPS9D1-207ENST00000568691 C2orf71A6NGG8 1288 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 EOMESO95936 686 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 SRGAP2BP0DMP2 458 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 ATXN1P54253 815 aaKnown RBP13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 ST3GAL2Q16842 350 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 TPRNQ4KMQ1 711 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 RARS2Q5T160 578 aaKnown RBP13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 SPOUT1Q5T280 376 aaKnown RBP13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 KIAA1841Q6NSI8 718 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 RSPH3Q86UC2 560 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 ENAHQ8N8S7 591 aaPredicted RBP13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 TMEM40Q8WWA1 233 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 RUBCNQ92622 972 aa13.61□□□□□ -0.23
VPS9D1-207ENST00000568691 TMX3Q96JJ7 454 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms