RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KINO60870 393 aaKnown RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 CAND2O75155 1236 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TADA3O75528 432 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 LTFP02788 710 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 KRT15P19012 456 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 HOXA5P20719 270 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 PEX19P40855 299 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 SARSP49591 514 aaKnown RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 DNM2P50570 870 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 SLURP1P55000 103 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 ITGA1P56199 1179 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 GABREP78334 506 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TRAF1Q13077 416 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 IFT88Q13099 833 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TUSC3Q13454 348 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 PDCD2Q16342 344 aaPredicted RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 NT5DC1Q5TFE4 455 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 PRAMEF18Q5VWM3 479 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 AP1ARQ63HQ0 302 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 MCTP2Q6DN12 878 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TEPPQ6URK8 271 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 CLEC4GQ6UXB4 293 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TMC5Q6UXY8 1006 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 LIPIQ6XZB0 460 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TTLL10Q6ZVT0 673 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TRIM48Q8IWZ4 208 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 CARFQ8N187 725 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TTLL6Q8N841 843 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 KYQ8NBH2 561 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 ZSWIM2Q8NEG5 633 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 C11orf84Q9BUA3 381 aaPredicted RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 CD244Q9BZW8 370 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 TMX4Q9H1E5 349 aaPredicted RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 CDIP1Q9H305 208 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 DEF6Q9H4E7 631 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 UTP6Q9NYH9 597 aaKnown RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 CWC15Q9P013 229 aaKnown RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 MAGEC2Q9UBF1 373 aaPredicted RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 ASH2LQ9UBL3 628 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 CROTQ9UKG9 612 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 DSEQ9UL01 958 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 ZKSCAN5Q9Y2L8 839 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 NLRP1Q9C000 1473 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 AKNAQ7Z591 1439 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 DHX29Q7Z478 1369 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 NPC1L1Q9UHC9 1359 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ABCA5Q8WWZ7 1642 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 OTOL1A6NHN0 477 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 IPO5O00410 1097 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 PPFIA4O75335 1185 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 CRTAMO95727 393 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 C6orf222P0C671 652 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 PYGMP11217 842 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 THBS2P35442 1172 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 COPB2P35606 906 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 FLT3P36888 993 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 GJA9P57773 515 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 PSMC1P62191 440 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 CAP1Q01518 475 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ICA1Q05084 483 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 SYCP1Q15431 976 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 LONRF2Q1L5Z9 754 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 CR1LQ2VPA4 569 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ZC3H12BQ5HYM0 836 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 GJC2Q5T442 439 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 ZFYVE27Q5T4F4 411 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 CYP4F22Q6NT55 531 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 LILRA6Q6PI73 481 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 TRIM74Q86UV6 250 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 TRIM73Q86UV7 250 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ANKRD20A12PQ8NF67 263 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 UHMK1Q8TAS1 419 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 THAP3Q8WTV1 239 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 UBXN4Q92575 508 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 FBXW5Q969U6 566 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 CLIC6Q96NY7 704 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 AGAP3Q96P47 875 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ADAM7Q9H2U9 754 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 RMI1Q9H9A7 625 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 VEZTQ9HBM0 779 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 LUC7LQ9NQ29 371 aaKnown RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 SPATA6Q9NWH7 488 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 IRAK4Q9NWZ3 460 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 RBPJLQ9UBG7 517 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 POLKQ9UBT6 870 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 SFMBT1Q9UHJ3 866 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 PNMA2Q9UL42 364 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 PTCH2Q9Y6C5 1203 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ERICH3Q5RHP9 1530 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 NCOA2Q15596 1464 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 ARID1BQ8NFD5 2236 aaPredicted RBP3.78□□□□□ -1.8
VPS35-208ENST00000568612 ARHGAP31Q2M1Z3 1444 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 CEP162Q5TB80 1403 aa3.78□□□□□ -1.8
VPS35-208ENST00000568612 PLEKHG2Q9H7P9 1386 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 BAZ1AQ9NRL2 1556 aaPredicted RBP3.77□□□□□ -1.81
VPS35-208ENST00000568612 MAPKBP1O60336 1514 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 SH3D21A4FU49 640 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 DDX3XO00571 662 aaKnown RBP eCLIP3.77□□□□□ -1.812e-9■■■■■ 46.6
VPS35-208ENST00000568612 KCNK3O14649 394 aa3.77□□□□□ -1.81
VPS35-208ENST00000568612 LRG1P02750 347 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms