RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 AEBP2Q6ZN18 517 aaPredicted RBP14.47□□□□□ -0.09
VPS35-208ENST00000568612 CHIC1Q5VXU3 224 aa14.07□□□□□ -0.16
VPS35-208ENST00000568612 PHF23Q9BUL5 403 aaPredicted RBP12.35□□□□□ -0.43
VPS35-208ENST00000568612 SENP3Q9H4L4 574 aaPredicted RBP12.32□□□□□ -0.44
VPS35-208ENST00000568612 FOXD1Q16676 465 aa11.43□□□□□ -0.58
VPS35-208ENST00000568612 PLPPR3Q6T4P5 718 aa11.42□□□□□ -0.58
VPS35-208ENST00000568612 ADRA2BP18089 450 aa10.96□□□□□ -0.65
VPS35-208ENST00000568612 PPP6R1Q9UPN7 881 aa10.94□□□□□ -0.66
VPS35-208ENST00000568612 PIAS4Q8N2W9 510 aaPredicted RBP10.81□□□□□ -0.68
VPS35-208ENST00000568612 MSH5O43196 834 aa10.58□□□□□ -0.72
VPS35-208ENST00000568612 PPP4R3CPQ6ZMV5 832 aa10.06□□□□□ -0.8
VPS35-208ENST00000568612 SCAF1Q9H7N4 1312 aaKnown RBP10.04□□□□□ -0.8
VPS35-208ENST00000568612 POTEDQ86YR6 584 aa10.03□□□□□ -0.8
VPS35-208ENST00000568612 MAPK8IP2Q13387 824 aaPredicted RBP9.96□□□□□ -0.82
VPS35-208ENST00000568612 DMRT2Q9Y5R5 561 aa9.8□□□□□ -0.84
VPS35-208ENST00000568612 NCBP3Q53F19 620 aaKnown RBP9.79□□□□□ -0.84
VPS35-208ENST00000568612 CNKSR2Q8WXI2 1034 aa9.78□□□□□ -0.84
VPS35-208ENST00000568612 KCNA4P22459 653 aa9.75□□□□□ -0.85
VPS35-208ENST00000568612 NPM3O75607 178 aaKnown RBP9.62□□□□□ -0.87
VPS35-208ENST00000568612 RNF216Q9NWF9 866 aaPredicted RBP9.59□□□□□ -0.87
VPS35-208ENST00000568612 HOXD11P31277 338 aaPredicted RBP9.55□□□□□ -0.88
VPS35-208ENST00000568612 DCAF8L1A6NGE4 600 aa9.51□□□□□ -0.89
VPS35-208ENST00000568612 SLC4A1APQ9BWU0 796 aaKnown RBP9.29□□□□□ -0.92
VPS35-208ENST00000568612 DNAJC5BQ9UF47 199 aa9.23□□□□□ -0.93
VPS35-208ENST00000568612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS35-208ENST00000568612 SLC4A2P04920 1241 aa9.08□□□□□ -0.96
VPS35-208ENST00000568612 RNF39Q9H2S5 420 aa9.04□□□□□ -0.96
VPS35-208ENST00000568612 EHMT2Q96KQ7 1210 aa9□□□□□ -0.97
VPS35-208ENST00000568612 FOXD4L1Q9NU39 408 aa8.99□□□□□ -0.97
VPS35-208ENST00000568612 U3KPZ7 1027 aaPredicted RBP8.98□□□□□ -0.97
VPS35-208ENST00000568612 ZBTB22O15209 634 aa8.94□□□□□ -0.98
VPS35-208ENST00000568612 CACNB1Q02641 598 aaPredicted RBP8.93□□□□□ -0.98
VPS35-208ENST00000568612 C1QBPQ07021 282 aaKnown RBP8.93□□□□□ -0.98
VPS35-208ENST00000568612 MYCNP04198 464 aaPredicted RBP8.9□□□□□ -0.98
VPS35-208ENST00000568612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.86□□□□□ -0.99
VPS35-208ENST00000568612 HNRNPUL2Q1KMD3 747 aaKnown RBP8.86□□□□□ -0.99
VPS35-208ENST00000568612 SAMD1Q6SPF0 538 aaPredicted RBP8.83□□□□□ -1
VPS35-208ENST00000568612 CSRNP3Q8WYN3 585 aa8.83□□□□□ -1
VPS35-208ENST00000568612 APLP2Q06481 763 aa8.8□□□□□ -1
VPS35-208ENST00000568612 CAPN15O75808 1086 aa8.79□□□□□ -1
VPS35-208ENST00000568612 SPINK5Q9NQ38 1064 aaPredicted RBP8.77□□□□□ -1.01
VPS35-208ENST00000568612 TRHP20396 242 aaPredicted RBP8.74□□□□□ -1.01
VPS35-208ENST00000568612 ZNF219Q9P2Y4 722 aaPredicted RBP8.68□□□□□ -1.02
VPS35-208ENST00000568612 ATF5Q9Y2D1 282 aaPredicted RBP8.66□□□□□ -1.02
VPS35-208ENST00000568612 ATXN8OSP0DMR3 200 aa8.64□□□□□ -1.03
VPS35-208ENST00000568612 ABCB7O75027 752 aa8.62□□□□□ -1.03
VPS35-208ENST00000568612 DSG3P32926 999 aa8.59□□□□□ -1.03
VPS35-208ENST00000568612 POLA2Q14181 598 aa8.54□□□□□ -1.04
VPS35-208ENST00000568612 ZBTB12Q9Y330 459 aaPredicted RBP8.38□□□□□ -1.07
VPS35-208ENST00000568612 FBLN2P98095 1184 aa8.35□□□□□ -1.07
VPS35-208ENST00000568612 MKRN4PQ13434 485 aaPredicted RBP8.26□□□□□ -1.09
VPS35-208ENST00000568612 OSCARQ8IYS5 282 aa8.26□□□□□ -1.09
VPS35-208ENST00000568612 RBM42Q9BTD8 480 aaKnown RBP8.21□□□□□ -1.1
VPS35-208ENST00000568612 ZNF692Q9BU19 519 aaPredicted RBP8.14□□□□□ -1.11
VPS35-208ENST00000568612 SPDYE2BA6NHP3 402 aa8.13□□□□□ -1.11
VPS35-208ENST00000568612 SPDYE6P0CI01 402 aa8.13□□□□□ -1.11
VPS35-208ENST00000568612 SPDYE2Q495Y8 402 aa8.13□□□□□ -1.11
VPS35-208ENST00000568612 SPDYE4A6NLX3 237 aa8.09□□□□□ -1.11
VPS35-208ENST00000568612 AKT1S1Q96B36 256 aa8.07□□□□□ -1.12
VPS35-208ENST00000568612 FKBP8Q14318 412 aa8.05□□□□□ -1.12
VPS35-208ENST00000568612 SSUH2Q9Y2M2 353 aa8.03□□□□□ -1.12
VPS35-208ENST00000568612 PABPN1Q86U42 306 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS35-208ENST00000568612 REM2Q8IYK8 340 aaPredicted RBP8□□□□□ -1.13
VPS35-208ENST00000568612 CLEC11AQ9Y240 323 aa7.97□□□□□ -1.13
VPS35-208ENST00000568612 SPDYE1Q8NFV5 336 aaPredicted RBP7.94□□□□□ -1.14
VPS35-208ENST00000568612 PITPNM1O00562 1244 aa7.93□□□□□ -1.14
VPS35-208ENST00000568612 CHRDL2Q6WN34 429 aa7.9□□□□□ -1.14
VPS35-208ENST00000568612 PRR29P0C7W0 189 aa7.85□□□□□ -1.15
VPS35-208ENST00000568612 STAG3Q9UJ98 1225 aa7.85□□□□□ -1.15
VPS35-208ENST00000568612 PROM2Q8N271 834 aa7.84□□□□□ -1.15
VPS35-208ENST00000568612 PIP4P2Q8N4L2 257 aa7.78□□□□□ -1.16
VPS35-208ENST00000568612 FBXO3Q9UK99 471 aa7.76□□□□□ -1.17
VPS35-208ENST00000568612 PRKAR2AP13861 404 aaKnown RBP7.75□□□□□ -1.17
VPS35-208ENST00000568612 FXR2P51116 673 aaKnown RBP eCLIP7.75□□□□□ -1.178e-12■■■□□ 17.3
VPS35-208ENST00000568612 CHADLQ6NUI6 762 aa7.74□□□□□ -1.17
VPS35-208ENST00000568612 POTEHQ6S545 545 aa7.73□□□□□ -1.17
VPS35-208ENST00000568612 MIER1Q8N108 512 aa7.71□□□□□ -1.18
VPS35-208ENST00000568612 PLCD3Q8N3E9 789 aa7.71□□□□□ -1.18
VPS35-208ENST00000568612 PLEKHG5O94827 1062 aa7.7□□□□□ -1.18
VPS35-208ENST00000568612 CREBZFQ9NS37 354 aa7.68□□□□□ -1.18
VPS35-208ENST00000568612 VASPP50552 380 aaPredicted RBP7.66□□□□□ -1.18
VPS35-208ENST00000568612 FARP1Q9Y4F1 1045 aaPredicted RBP7.63□□□□□ -1.19
VPS35-208ENST00000568612 KLHL34Q8N239 644 aa7.61□□□□□ -1.19
VPS35-208ENST00000568612 HAX1O00165 279 aa7.6□□□□□ -1.19
VPS35-208ENST00000568612 NPM1P06748 294 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS35-208ENST00000568612 ZBTB47Q9UFB7 747 aaPredicted RBP7.59□□□□□ -1.19
VPS35-208ENST00000568612 MNX1P50219 401 aaPredicted RBP7.55□□□□□ -1.2
VPS35-208ENST00000568612 CD44P16070 742 aaKnown RBP7.53□□□□□ -1.2
VPS35-208ENST00000568612 IFNLR1Q8IU57 520 aaPredicted RBP7.52□□□□□ -1.21
VPS35-208ENST00000568612 PAK3O75914 559 aaPredicted RBP7.51□□□□□ -1.21
VPS35-208ENST00000568612 C19orf67A6NJJ6 358 aa7.5□□□□□ -1.21
VPS35-208ENST00000568612 TSPYL2Q9H2G4 693 aaPredicted RBP7.49□□□□□ -1.21
VPS35-208ENST00000568612 SPOCK2Q92563 424 aa7.48□□□□□ -1.21
VPS35-208ENST00000568612 ZRANB1Q9UGI0 708 aa7.48□□□□□ -1.21
VPS35-208ENST00000568612 EVX2Q03828 476 aa7.47□□□□□ -1.21
VPS35-208ENST00000568612 RASEFQ8IZ41 740 aa7.47□□□□□ -1.21
VPS35-208ENST00000568612 NUBP1P53384 320 aa7.45□□□□□ -1.22
VPS35-208ENST00000568612 DCAF8Q5TAQ9 597 aa7.45□□□□□ -1.22
VPS35-208ENST00000568612 FAM212AQ96EL1 285 aa7.45□□□□□ -1.22
VPS35-208ENST00000568612 CIZ1Q9ULV3 898 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms