RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	YFL068W	P0CX99	160 aa		4.65	□□□□□ -1.67
UBC6	YER100W	YLL066W-A	P0CY00	160 aa		4.65	□□□□□ -1.67
UBC6	YER100W	YLL067W-A	P0CY01	160 aa		4.65	□□□□□ -1.67
UBC6	YER100W	YCL068C	P25593	260 aa		4.65	□□□□□ -1.67
UBC6	YER100W	ITR1	P30605	584 aa		4.65	□□□□□ -1.67
UBC6	YER100W	BUD2	P33314	1104 aa		4.65	□□□□□ -1.67
UBC6	YER100W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
UBC6	YER100W	COY1	P34237	679 aa		4.65	□□□□□ -1.67
UBC6	YER100W	AZF1	P41696	914 aa		4.65	□□□□□ -1.67
UBC6	YER100W	AGX1	P43567	385 aa		4.65	□□□□□ -1.67
UBC6	YER100W	EMC2	P47133	292 aa	Known RBP	4.65	□□□□□ -1.67
UBC6	YER100W	YMR181C	Q03231	154 aa		4.65	□□□□□ -1.67
UBC6	YER100W	RTT103	Q05543	409 aa		4.65	□□□□□ -1.67
UBC6	YER100W	HCR1	Q05775	265 aa	Known RBP	4.65	□□□□□ -1.67
UBC6	YER100W	COQ11	Q05892	277 aa		4.65	□□□□□ -1.67
UBC6	YER100W	BCP1	Q06338	283 aa		4.65	□□□□□ -1.67
UBC6	YER100W	MRPL35	Q06678	367 aa		4.65	□□□□□ -1.67
UBC6	YER100W	YAP7	Q08182	245 aa		4.65	□□□□□ -1.67
UBC6	YER100W	RUD3	Q12234	484 aa	Known RBP	4.65	□□□□□ -1.67
UBC6	YER100W	NCA2	Q12374	616 aa		4.65	□□□□□ -1.67
UBC6	YER100W	YOP1	Q12402	180 aa		4.65	□□□□□ -1.67
UBC6	YER100W	TDH1	P00360	332 aa	Known RBP	4.64	□□□□□ -1.67
UBC6	YER100W	GLN3	P18494	730 aa		4.64	□□□□□ -1.67
UBC6	YER100W	MEK1	P24719	497 aa	Predicted RBP	4.64	□□□□□ -1.67
UBC6	YER100W	YUR1	P26725	428 aa		4.64	□□□□□ -1.67
UBC6	YER100W	YEF1	P32622	495 aa		4.64	□□□□□ -1.67
UBC6	YER100W	MNS1	P32906	549 aa		4.64	□□□□□ -1.67
UBC6	YER100W	RPC25	P35718	212 aa		4.64	□□□□□ -1.67
UBC6	YER100W	HSM3	P38348	480 aa		4.64	□□□□□ -1.67
UBC6	YER100W	DHH1	P39517	506 aa	Known RBP	4.64	□□□□□ -1.67
UBC6	YER100W	BTT1	P40314	149 aa	Predicted RBP	4.64	□□□□□ -1.67
UBC6	YER100W	SEC9	P40357	651 aa		4.64	□□□□□ -1.67
UBC6	YER100W	UTP25	P40498	721 aa	Known RBP	4.64	□□□□□ -1.67
UBC6	YER100W	SEC27	P41811	889 aa	Known RBP	4.64	□□□□□ -1.67
UBC6	YER100W	SFH5	P47008	294 aa		4.64	□□□□□ -1.67
UBC6	YER100W	MDV1	P47025	714 aa		4.64	□□□□□ -1.67
UBC6	YER100W	ATC1	Q04005	294 aa		4.64	□□□□□ -1.67
UBC6	YER100W	YNL162W-A	Q3E7A8	72 aa		4.64	□□□□□ -1.67
UBC6	YER100W	RPL18A	P0CX49	186 aa	Known RBP	4.63	□□□□□ -1.67
UBC6	YER100W	RPL18B	P0CX50	186 aa	Known RBP	4.63	□□□□□ -1.67
UBC6	YER100W	RPT5	P33297	434 aa	Known RBP	4.63	□□□□□ -1.67
UBC6	YER100W	MRPS5	P33759	307 aa		4.63	□□□□□ -1.67
UBC6	YER100W	YKL097C	P34245	136 aa		4.63	□□□□□ -1.67
UBC6	YER100W	KKQ8	P36004	724 aa		4.63	□□□□□ -1.67
UBC6	YER100W	TPO5	P36029	618 aa		4.63	□□□□□ -1.67
UBC6	YER100W	MCR1	P36060	302 aa	Known RBP	4.63	□□□□□ -1.67
UBC6	YER100W	MRPL37	P36532	105 aa		4.63	□□□□□ -1.67
UBC6	YER100W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	RIP-Chip
UBC6	YER100W	AVT4	P50944	713 aa		4.63	□□□□□ -1.67
UBC6	YER100W	YGL185C	P53100	379 aa		4.63	□□□□□ -1.67
UBC6	YER100W	POP6	P53218	158 aa		4.63	□□□□□ -1.67
UBC6	YER100W	MPP6	P53725	186 aa	Predicted RBP	4.63	□□□□□ -1.67
UBC6	YER100W	YNL260C	P53846	198 aa		4.63	□□□□□ -1.67
UBC6	YER100W	CWC21	Q03375	135 aa	Known RBP	4.63	□□□□□ -1.67
UBC6	YER100W	SMP3	Q04174	516 aa		4.63	□□□□□ -1.67
UBC6	YER100W	RAX1	Q08760	435 aa		4.63	□□□□□ -1.67
UBC6	YER100W	CAR2	P07991	424 aa	Known RBP	4.62	□□□□□ -1.67
UBC6	YER100W	MXR2	P25566	168 aa		4.62	□□□□□ -1.67
UBC6	YER100W	ALG8	P40351	577 aa		4.62	□□□□□ -1.67
UBC6	YER100W	INA22	P40576	216 aa		4.62	□□□□□ -1.67
UBC6	YER100W	SPR6	Q01684	191 aa		4.62	□□□□□ -1.67
UBC6	YER100W	RIM13	Q03792	727 aa		4.62	□□□□□ -1.67
UBC6	YER100W	CSI1	Q04368	295 aa		4.62	□□□□□ -1.67
UBC6	YER100W	BCH1	Q05029	724 aa		4.62	□□□□□ -1.67
UBC6	YER100W	APC5	Q08683	685 aa		4.62	□□□□□ -1.67
UBC6	YER100W	YOR338W	Q99326	363 aa		4.62	□□□□□ -1.67
UBC6	YER100W	POM152	P39685	1337 aa		4.62	□□□□□ -1.67
UBC6	YER100W	ATR1	P13090	542 aa		4.61	□□□□□ -1.67
UBC6	YER100W	FAR1	P21268	830 aa		4.61	□□□□□ -1.67
UBC6	YER100W	CIN8	P27895	1000 aa		4.61	□□□□□ -1.67
UBC6	YER100W	ZUO1	P32527	433 aa	Known RBP	4.61	□□□□□ -1.67
UBC6	YER100W	FAA2	P39518	744 aa		4.61	□□□□□ -1.67
UBC6	YER100W	YIL152W	P40455	235 aa		4.61	□□□□□ -1.67
UBC6	YER100W	IKS1	P47042	667 aa		4.61	□□□□□ -1.67
UBC6	YER100W	LIA1	P47120	325 aa	Known RBP	4.61	□□□□□ -1.67
UBC6	YER100W	AZR1	P50080	613 aa		4.61	□□□□□ -1.67
UBC6	YER100W	YDR415C	Q04033	374 aa	Predicted RBP	4.61	□□□□□ -1.67
UBC6	YER100W	UBX2	Q04228	584 aa		4.61	□□□□□ -1.67
UBC6	YER100W	SHS1	Q07657	551 aa		4.61	□□□□□ -1.67
UBC6	YER100W	DNL4	Q08387	944 aa	Predicted RBP	4.61	□□□□□ -1.67
UBC6	YER100W	SGT2	Q12118	346 aa	Known RBP	4.61	□□□□□ -1.67
UBC6	YER100W	FMP16	Q12497	93 aa		4.61	□□□□□ -1.67
UBC6	YER100W	RPL24A	P04449	155 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	ARF2	P19146	181 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	SPS22	P25380	463 aa		4.6	□□□□□ -1.67
UBC6	YER100W	YCR022C	P25620	114 aa		4.6	□□□□□ -1.67
UBC6	YER100W	RPL5	P26321	297 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	VMA5	P31412	392 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	PTR2	P32901	601 aa		4.6	□□□□□ -1.67
UBC6	YER100W	CCT4	P39078	528 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	RCY1	P39531	840 aa		4.6	□□□□□ -1.67
UBC6	YER100W	PCI8	P40512	444 aa		4.6	□□□□□ -1.67
UBC6	YER100W	YIR016W	P40572	265 aa		4.6	□□□□□ -1.67
UBC6	YER100W	CAF40	P53829	373 aa		4.6	□□□□□ -1.67
UBC6	YER100W	RVB1	Q03940	463 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	NAT4	Q04751	285 aa		4.6	□□□□□ -1.67
UBC6	YER100W	ERP1	Q05359	219 aa	Known RBP	4.6	□□□□□ -1.67
UBC6	YER100W	DSE3	Q08729	430 aa		4.6	□□□□□ -1.67
UBC6	YER100W	CSR2	Q12734	1121 aa		4.6	□□□□□ -1.67
UBC6	YER100W	RRP12	Q12754	1228 aa	Known RBP	4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms