RNA–Protein interactions for RNA: YCL005W-A

VMA9, Transcript of Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex, yeast

Gene VMA9, Length 222 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA9	YCL005W-A	CBF1	P17106	351 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	HPR1	P17629	752 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	KGD1	P20967	1014 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	RPS1B	P23248	255 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	CHA1	P25379	360 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	DCC1	P25559	380 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	RAD14	P28519	371 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	NDI1	P32340	513 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	SKG6	P32900	734 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	RPS1A	P33442	255 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	SRB2	P34162	210 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	CLG1	P35190	452 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YPT53	P36019	220 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	MRPL15	P36523	253 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	MRPL36	P36531	177 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YBR139W	P38109	508 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	PFF1	P38244	976 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	RRT2	P38332	387 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	DED81	P38707	554 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	IPI1	P38803	334 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	PTI1	P39927	425 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	KRE29	P40026	464 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	LSM4	P40070	187 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	YMR144W	P40214	342 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	PGD1	P40356	397 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	ATM1	P40416	690 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	ASG1	P40467	964 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	CDC1	P40986	491 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	ARF3	P40994	183 aa	RIP-Chip data	2.2	□□□□□ -2.06	not detected
VMA9	YCL005W-A	SKP2	P42843	763 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	SER2	P42941	309 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	FET5	P43561	622 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	SAD1	P43589	448 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YFR018C	P43599	363 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	ROK1	P45818	564 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	AIP1	P46680	615 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	BUD13	P46947	266 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	RPE1	P46969	238 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	RPA34	P47006	233 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	UBX6	P47049	396 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YJL016W	P47072	561 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	AIM24	P47127	394 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	ADO1	P47143	340 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	EFM3	P47163	339 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	NAS6	P50086	228 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YML6	P51998	286 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	UBC12	P52491	188 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	PMT5	P52867	743 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	NOP19	P53317	196 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	SSU72	P53538	206 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	2.2	□□□□□ -2.06	not detected
VMA9	YCL005W-A	AAT1	Q01802	451 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	TRM82	Q03774	444 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YDR249C	Q03787	373 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	TAF11	Q04226	346 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	TDA9	Q04545	1251 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	APC4	Q04601	652 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	UTP21	Q06078	939 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	KAP95	Q06142	861 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	ASR1	Q06834	288 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	MLH2	Q07980	695 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	DIS3	Q08162	1001 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	LEA1	Q08963	238 aa	Predicted RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	MDM32	Q12171	622 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YPR1	Q12458	312 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	MHF1	Q3E835	90 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YBR298C-A	Q8TGK4	73 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	YOR019W	Q99248	730 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	NTE1	Q04958	1679 aa		2.2	□□□□□ -2.06
VMA9	YCL005W-A	URB1	P34241	1764 aa	Known RBP	2.2	□□□□□ -2.06
VMA9	YCL005W-A	NUP188	P52593	1655 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-LR1	P0C2J3	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-F	P0CX63	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-GR2	P0CX64	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-C	P25384	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-DR2	Q03494	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY1B-DR1	Q03855	1755 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-DR3	Q07791	1770 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-OR1	Q12113	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-DR1	Q12472	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-B	Q12491	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TY2B-OR2	Q12501	1770 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	CAR1	P00812	333 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	REP2	P03872	296 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	BI2	P03873	423 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	COX4	P04037	155 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	TPK3	P05986	398 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	KIN28	P06242	306 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	NFT1	P0CE68	1218 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	SNF3	P10870	884 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	NSP1	P14907	823 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	GLK1	P17709	500 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	MRPL44	P19956	98 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	ERG8	P24521	451 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	GIT1	P25346	518 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	LRE1	P25579	583 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	FUN26	P31381	517 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	SAC1	P32368	623 aa	Known RBP	2.19	□□□□□ -2.06
VMA9	YCL005W-A	SLC1	P33333	303 aa		2.19	□□□□□ -2.06
VMA9	YCL005W-A	JEN1	P36035	616 aa		2.19	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms