RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 MUTP22033 750 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 DDIT3P35638 169 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 LONP1P36776 959 aaKnown RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 NASPP49321 788 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 PTPAQ15257 358 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 GRIK4Q16099 956 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 KRT79Q5XKE5 535 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 TRMT1LQ7Z2T5 733 aaKnown RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 C4orf19Q8IY42 314 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 POLR3CQ9BUI4 534 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 TRPV6Q9H1D0 765 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 TMEM39AQ9NV64 488 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 RGL1Q9NZL6 768 aa15.43■□□□□ 0.06
PTCH1-213ENST00000546820 SRPRBQ9Y5M8 271 aaKnown RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 MORC2Q9Y6X9 1032 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 MYH9P35579 1960 aaKnown RBP15.43■□□□□ 0.06
PTCH1-213ENST00000546820 COL1A2P08123 1366 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 SPTLC2O15270 562 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 ZNF862O60290 1169 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 B4GALT4O60513 344 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 XRCC6P12956 609 aaKnown RBP eCLIP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 ATP4AP20648 1035 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 RPA1P27694 616 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 MARCKSP29966 332 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 KRT85P78386 507 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 PRKCEQ02156 737 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 CYP4A11Q02928 519 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 FAAP100Q0VG06 881 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 CTTNQ14247 550 aaKnown RBP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 IL17AQ16552 155 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 GDF6Q6KF10 455 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 EXOC8Q8IYI6 725 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 C7orf61Q8IZ16 206 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 CCDC155Q8N6L0 562 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 LINC00301Q8NCQ3 95 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 KCNG4Q8TDN1 519 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 PPP1R13LQ8WUF5 828 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 LXNQ9BS40 222 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 FTOQ9C0B1 505 aaKnown RBP eCLIP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 TRMT13Q9NUP7 481 aaKnown RBP15.42■□□□□ 0.06
PTCH1-213ENST00000546820 CHMP5Q9NZZ3 219 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 KAT6AQ92794 2004 aa15.42■□□□□ 0.06
PTCH1-213ENST00000546820 MAGEB2O15479 319 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 SLC26A4O43511 780 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 PPP6R2O75170 966 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 LYPLA2O95372 231 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 RPLP2P05387 115 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 NCLP19338 710 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 CCT6AP40227 531 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 UBA7P41226 1012 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 IGBP1P78318 339 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 DNM1Q05193 864 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 PTK7Q13308 1070 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 UGCGQ16739 394 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 CATSPER3Q86XQ3 398 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 KRI1Q8N9T8 703 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 SNX29Q8TEQ0 813 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 NACC1Q96RE7 527 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 NIFKQ9BYG3 293 aaKnown RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 PRDM5Q9NQX1 630 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-213ENST00000546820 PPME1Q9Y570 386 aa15.41■□□□□ 0.06
PTCH1-213ENST00000546820 TREHO43280 583 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 KLRC1P26715 233 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 HOXC8P31273 242 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 YWHABP31946 246 aaKnown RBP15.4■□□□□ 0.06
PTCH1-213ENST00000546820 BFSP2Q13515 415 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 TAF2Q6P1X5 1199 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 RSPH3Q86UC2 560 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 KCTD17Q8N5Z5 321 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 RETREG2Q8NC44 543 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 LMBR1Q8WVP7 490 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 CDK5RAP3Q96JB5 506 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 CCDC43Q96MW1 224 aaKnown RBP15.4■□□□□ 0.06
PTCH1-213ENST00000546820 SCAND2PQ9GZW5 306 aaPredicted RBP15.4■□□□□ 0.06
PTCH1-213ENST00000546820 ANKEF1Q9NU02 776 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 SEPT9Q9UHD8 586 aaPredicted RBP15.4■□□□□ 0.06
PTCH1-213ENST00000546820 TUBE1Q9UJT0 475 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 RCOR1Q9UKL0 485 aa15.4■□□□□ 0.06
PTCH1-213ENST00000546820 KIAA0355O15063 1070 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 SPATA31C1P0DKV0 1188 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 RAG1P15918 1043 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 TMOD1P28289 359 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 TXLNAP40222 546 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 ADAM17P78536 824 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 ZNF200P98182 395 aaPredicted RBP15.39■□□□□ 0.05
PTCH1-213ENST00000546820 TBC1D8BQ0IIM8 1120 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 MTHFD1LQ6UB35 978 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 SERINC5Q86VE9 423 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 CAGE1Q8TC20 777 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 CALML4Q96GE6 196 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 CEP170P1Q96L14 293 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 JPH2Q9BR39 696 aaPredicted RBP15.39■□□□□ 0.05
PTCH1-213ENST00000546820 NT5C3AQ9H0P0 336 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 FBXO2Q9UK22 296 aaPredicted RBP15.39■□□□□ 0.05
PTCH1-213ENST00000546820 KIAA1024Q9UPX6 916 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 PCDHA2Q9Y5H9 948 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 KDM3AQ9Y4C1 1321 aa15.39■□□□□ 0.05
PTCH1-213ENST00000546820 MBLAC1A4D2B0 266 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-213ENST00000546820 CUTAO60888 179 aa15.38■□□□□ 0.05
PTCH1-213ENST00000546820 MED24O75448 989 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms