RNA–Protein interactions for RNA: YPR066W

UBA3, Transcript of Protein that activates Rub1p (NEDD8) before neddylation, yeast

Gene UBA3, Length 900 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA3	YPR066W	YGR111W	P53265	400 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	RHO4	Q00246	291 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	ELP3	Q02908	557 aa	Known RBP	4.93	□□□□□ -1.62
UBA3	YPR066W	IZH1	Q03419	316 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	SEG1	Q04279	960 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	SPG3	Q04398	127 aa	Predicted RBP	4.93	□□□□□ -1.62
UBA3	YPR066W	DIC1	Q06143	298 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	SSK1	Q07084	712 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	GSH2	Q08220	491 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	APL5	Q08951	932 aa	Known RBP	4.93	□□□□□ -1.62
UBA3	YPR066W	HER1	Q12276	1246 aa		4.93	□□□□□ -1.62
UBA3	YPR066W	YPT1	P01123	206 aa	Known RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	ATP10	P18496	279 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	ATP11	P32453	318 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	OCA1	P50946	238 aa	Predicted RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	TRM112	P53738	135 aa	Predicted RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	YNL234W	P53857	426 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	RPL15B	P54780	204 aa	Predicted RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	PEX25	Q02969	394 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	ACL4	Q03771	387 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	RIM13	Q03792	727 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	COQ11	Q05892	277 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	NSE1	Q07913	336 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	UAF30	Q08747	228 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	NDD1	Q08887	554 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	TAF10	Q12030	206 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	ATX2	Q12067	313 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	RPN5	Q12250	445 aa	Known RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	YNL162W-A	Q3E7A8	72 aa		4.92	□□□□□ -1.62
UBA3	YPR066W	MEX67	Q99257	599 aa	Known RBP	4.92	□□□□□ -1.62
UBA3	YPR066W	GPH1	P06738	902 aa	Known RBP	4.91	□□□□□ -1.62
UBA3	YPR066W	CUP1-1	P0CX80	61 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	CUP1-2	P0CX81	61 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	FPR1	P20081	114 aa	Known RBP	4.91	□□□□□ -1.62
UBA3	YPR066W	GID7	P25569	745 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	PDR3	P33200	976 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	NIP100	P33420	868 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	MRPL10	P36520	322 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	ECM13	P38195	257 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	WSC4	P38739	605 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	CHS6	P40955	746 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	URB2	P47108	1174 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	YGR016W	P53209	190 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	HOT1	Q03213	719 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	TAF9	Q05027	157 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	HEL2	Q05580	639 aa	Known RBP	4.91	□□□□□ -1.62
UBA3	YPR066W	VAM3	Q12241	283 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	BRR1	Q99177	341 aa	Predicted RBP	4.91	□□□□□ -1.62
UBA3	YPR066W	MSB2	P32334	1306 aa		4.91	□□□□□ -1.62
UBA3	YPR066W	RIP1	P08067	215 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	RPL42A	P0CX27	106 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	RPL42B	P0CX28	106 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	BAR1	P12630	587 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	PUT4	P15380	627 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	TYR1	P20049	452 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	URA4	P20051	364 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	AIM17	P23180	465 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	GEX1	P25596	615 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	PUP2	P32379	260 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	HIR2	P32480	875 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	LTV1	P34078	463 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	SRB2	P34162	210 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	CUE2	P36075	443 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	YPK3	P38070	525 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	SCO2	P38072	301 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	CAJ1	P39101	391 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	HEM14	P40012	539 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	XBP1	P40489	647 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	SYG1	P40528	902 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	RTS2	P40962	232 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	PSA1	P41940	361 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	ECM27	P47144	725 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	DIG1	Q03063	452 aa	Known RBP	4.9	□□□□□ -1.63
UBA3	YPR066W	ECI1	Q05871	280 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	YPR078C	Q06813	372 aa		4.9	□□□□□ -1.63
UBA3	YPR066W	IRA1	P18963	3092 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	JIP3	O13555	125 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	MES1	P00958	751 aa	Known RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBA3	YPR066W	SEC63	P14906	663 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	FUN19	P28003	413 aa	Predicted RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	PHD1	P36093	366 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	ARA1	P38115	344 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	SHQ1	P40486	507 aa	Predicted RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	TFG2	P41896	400 aa	Predicted RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	SNZ3	P43545	298 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	FET5	P43561	622 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	RMD9	P53140	646 aa	Known RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	SNZ2	P53824	298 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	KTR6	P54070	446 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	BSC1	Q12140	328 aa		4.89	□□□□□ -1.63
UBA3	YPR066W	SEN1	Q00416	2231 aa	Known RBP	4.89	□□□□□ -1.63
UBA3	YPR066W	RAD10	P06838	210 aa		4.88	□□□□□ -1.63
UBA3	YPR066W	RPL1A	P0CX43	217 aa	Known RBP	4.88	□□□□□ -1.63
UBA3	YPR066W	RPL1B	P0CX44	217 aa	Known RBP	4.88	□□□□□ -1.63
UBA3	YPR066W	MDM10	P18409	493 aa		4.88	□□□□□ -1.63
UBA3	YPR066W	CLN1	P20437	546 aa		4.88	□□□□□ -1.63
UBA3	YPR066W	BRF1	P29056	596 aa		4.88	□□□□□ -1.63
UBA3	YPR066W	SPC34	P36131	295 aa		4.88	□□□□□ -1.63
UBA3	YPR066W	PCH2	P38126	564 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms