RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	BCP1	Q06338	283 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	MCH4	Q08268	501 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	CLP1	Q08685	445 aa	Predicted RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	RDR1	Q08904	546 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	RNH203	Q12338	110 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	FMP16	Q12497	93 aa		4.14	□□□□□ -1.75
SOF1	YLL011W	ROM2	P51862	1356 aa	Known RBP	4.14	□□□□□ -1.75
SOF1	YLL011W	OPI3	P05375	206 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	ARG80	P07249	177 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	BAR1	P12630	587 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	VPS3	P23643	1011 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	ADY2	P25613	283 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YUR1	P26725	428 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	CBP4	P37267	147 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YER079W	P40052	210 aa	Known RBP	4.13	□□□□□ -1.75
SOF1	YLL011W	INA22	P40576	216 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YPS6	P40583	537 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YJL043W	P47053	257 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	IMD3	P50095	523 aa	Known RBP	4.13	□□□□□ -1.75
SOF1	YLL011W	GIP3	Q03016	1276 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YDR387C	Q04162	555 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YMR087W	Q04299	284 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	APC4	Q04601	652 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	RRN11	Q04712	507 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	BUG1	Q12191	341 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	FRE7	Q12333	620 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	YRM1	Q12340	786 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	MED4	Q12343	284 aa		4.13	□□□□□ -1.75
SOF1	YLL011W	PAA1	Q12447	191 aa	Known RBP	4.13	□□□□□ -1.75
SOF1	YLL011W	DST1	P07273	309 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	HEM1	P09950	548 aa	Predicted RBP	4.12	□□□□□ -1.75
SOF1	YLL011W	YLL053C	P0CD98	152 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	IMA3	P0CW40	589 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	IMA4	P0CW41	589 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	DBR1	P24309	405 aa	Known RBP	4.12	□□□□□ -1.75
SOF1	YLL011W	RAD57	P25301	460 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	PPZ1	P26570	692 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	SMY1	P32364	656 aa	Known RBP	4.12	□□□□□ -1.75
SOF1	YLL011W	STV1	P37296	890 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	RTC2	P38279	296 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	TCD1	P38756	429 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	YHR122W	P38829	231 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	RCY1	P39531	840 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	YJR154W	P47181	346 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	UBP8	P50102	471 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	PKP2	P53170	491 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	DSL1	P53847	754 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	YPL014W	Q02606	381 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	MUK1	Q02866	612 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	TAF12	Q03761	539 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	SNT309	Q06091	175 aa	Predicted RBP	4.12	□□□□□ -1.75
SOF1	YLL011W	SYO1	Q07395	620 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	IMA2	Q08295	589 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	AAD15	Q08361	143 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	YDR262W	Q12331	272 aa		4.12	□□□□□ -1.75
SOF1	YLL011W	AIM45	Q12480	344 aa	Known RBP	4.12	□□□□□ -1.75
SOF1	YLL011W	BI2	P03873	423 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	AQY1	P0CD91	305 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	MSS116	P15424	664 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	MAK32	P23060	363 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	HCM1	P25364	564 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	CIN8	P27895	1000 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	MSK1	P32048	576 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	APE2	P32454	952 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	SUA5	P32579	426 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	RAD24	P32641	659 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	PRS1	P32895	427 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	ECT1	P33412	323 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
SOF1	YLL011W	OCT1	P35999	772 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	OMA1	P36163	345 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	YHR045W	P38775	560 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	TRS85	P46944	698 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	ORC5	P50874	479 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	PMT5	P52867	743 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	MNT4	P53745	580 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	PET117	Q02771	107 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	URC2	Q04411	772 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	AIM33	Q04516	312 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	NRT1	Q08485	598 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	LSP1	Q12230	341 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	SUC2	P00724	532 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	RPL18A	P0CX49	186 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	RPL18B	P0CX50	186 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	SLM5	P25345	492 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	ICL1	P28240	557 aa	Predicted RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	HXT1	P32465	570 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	SPT10	P35208	640 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	RPC25	P35718	212 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	TAE1	P38340	232 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	LAG1	P38703	411 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	PET100	P38958	111 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	YER034W	P40022	185 aa	Known RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	RTR1	P40084	226 aa	Predicted RBP	4.11	□□□□□ -1.75
SOF1	YLL011W	BIO3	P50277	480 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	TIM21	P53220	239 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	YNL260C	P53846	198 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	GIM3	P53900	129 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	MRP51	Q02950	344 aa		4.11	□□□□□ -1.75
SOF1	YLL011W	NUP53	Q03790	475 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 38.6 ms