RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C SLM5P25345 492 aaKnown RBP2.09□□□□□ -2.08
UBP11YKR098C PUT3P25502 979 aaPredicted RBP2.09□□□□□ -2.08
UBP11YKR098C FAA2P39518 744 aa2.09□□□□□ -2.08
UBP11YKR098C RPH1P39956 796 aa2.09□□□□□ -2.08
UBP11YKR098C YJL070CP40361 888 aa2.09□□□□□ -2.08
UBP11YKR098C YFR016CP43597 1233 aaKnown RBP2.09□□□□□ -2.08
UBP11YKR098C HST1P53685 503 aa2.09□□□□□ -2.08
UBP11YKR098C CAF40P53829 373 aa2.09□□□□□ -2.08
UBP11YKR098C YMR181CQ03231 154 aa2.09□□□□□ -2.08
UBP11YKR098C TPT1Q12272 230 aaKnown RBP2.09□□□□□ -2.08
UBP11YKR098C SET6Q12529 373 aa2.09□□□□□ -2.08
UBP11YKR098C RAD61Q99359 647 aa2.09□□□□□ -2.08
UBP11YKR098C ATP1P07251 545 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C ARF1P11076 181 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C RNA1P11745 407 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C THR4P16120 514 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C SLY1P22213 666 aa2.08□□□□□ -2.08
UBP11YKR098C TOA2P32774 122 aa2.08□□□□□ -2.08
UBP11YKR098C LIN1P38852 340 aaPredicted RBP2.08□□□□□ -2.08
UBP11YKR098C MKT1P40850 830 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C TOS3P43637 560 aa2.08□□□□□ -2.08
UBP11YKR098C AZR1P50080 613 aa2.08□□□□□ -2.08
UBP11YKR098C COS10P52924 374 aa2.08□□□□□ -2.08
UBP11YKR098C RET3P53600 189 aa2.08□□□□□ -2.08
UBP11YKR098C ABZ2Q03266 374 aa2.08□□□□□ -2.08
UBP11YKR098C VPS20Q04272 221 aa2.08□□□□□ -2.08
UBP11YKR098C ASA1Q06822 443 aa2.08□□□□□ -2.08
UBP11YKR098C LDS2Q08218 356 aa2.08□□□□□ -2.08
UBP11YKR098C PEX27Q08580 376 aa2.08□□□□□ -2.08
UBP11YKR098C NCA2Q12374 616 aa2.08□□□□□ -2.08
UBP11YKR098C RRP12Q12754 1228 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C MAS1P10507 462 aa2.08□□□□□ -2.08
UBP11YKR098C DBP3P20447 523 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C COX13P32799 129 aa2.08□□□□□ -2.08
UBP11YKR098C SKT5P34226 696 aa2.08□□□□□ -2.08
UBP11YKR098C SPT10P35208 640 aa2.08□□□□□ -2.08
UBP11YKR098C KKQ8P36004 724 aa2.08□□□□□ -2.08
UBP11YKR098C YBR139WP38109 508 aa2.08□□□□□ -2.08
UBP11YKR098C MIX23P38162 196 aa2.08□□□□□ -2.08
UBP11YKR098C YBR137WP38276 179 aa2.08□□□□□ -2.08
UBP11YKR098C YHR122WP38829 231 aa2.08□□□□□ -2.08
UBP11YKR098C ATM1P40416 690 aa2.08□□□□□ -2.08
UBP11YKR098C SAD1P43589 448 aa2.08□□□□□ -2.08
UBP11YKR098C RRN9P53437 365 aa2.08□□□□□ -2.08
UBP11YKR098C ERV25P54837 211 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C HXT11P54862 567 aa2.08□□□□□ -2.08
UBP11YKR098C VTI1Q04338 217 aa2.08□□□□□ -2.08
UBP11YKR098C BCH1Q05029 724 aa2.08□□□□□ -2.08
UBP11YKR098C AIM45Q12480 344 aaKnown RBP2.08□□□□□ -2.08
UBP11YKR098C MCK1P21965 375 aaKnown RBP2.07□□□□□ -2.08
UBP11YKR098C DBR1P24309 405 aaKnown RBP2.07□□□□□ -2.08
UBP11YKR098C MSK1P32048 576 aa2.07□□□□□ -2.08
UBP11YKR098C HMX1P32339 317 aa2.07□□□□□ -2.08
UBP11YKR098C DOA1P36037 715 aa2.07□□□□□ -2.08
UBP11YKR098C ATP3P38077 311 aaKnown RBP2.07□□□□□ -2.08
UBP11YKR098C RIB5P38145 238 aa2.07□□□□□ -2.08
UBP11YKR098C LCP5P40079 357 aaPredicted RBP2.07□□□□□ -2.08
UBP11YKR098C SNL1P40548 159 aa2.07□□□□□ -2.08
UBP11YKR098C OST1P41543 476 aaKnown RBP2.07□□□□□ -2.08
UBP11YKR098C SPG5P42933 373 aa2.07□□□□□ -2.08
UBP11YKR098C SFH5P47008 294 aa2.07□□□□□ -2.08
UBP11YKR098C RRP46P53256 223 aaPredicted RBP2.07□□□□□ -2.08
UBP11YKR098C YMR310CQ04867 317 aaPredicted RBP2.07□□□□□ -2.08
UBP11YKR098C RAX1Q08760 435 aa2.07□□□□□ -2.08
UBP11YKR098C SNX3Q08826 162 aaKnown RBP2.07□□□□□ -2.08
UBP11YKR098C TPK3P05986 398 aa2.06□□□□□ -2.08
UBP11YKR098C RPC40P07703 335 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C RPS16AP0CX51 143 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C RPS16BP0CX52 143 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C HXT2P23585 541 aa2.06□□□□□ -2.08
UBP11YKR098C EXG1P23776 448 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C GRR1P24814 1151 aa2.06□□□□□ -2.08
UBP11YKR098C SPS22P25380 463 aa2.06□□□□□ -2.08
UBP11YKR098C YCL068CP25593 260 aa2.06□□□□□ -2.08
UBP11YKR098C NAT2P37293 288 aa2.06□□□□□ -2.08
UBP11YKR098C SSO2P39926 295 aa2.06□□□□□ -2.08
UBP11YKR098C YGR117CP53270 476 aa2.06□□□□□ -2.08
UBP11YKR098C COS1P53822 381 aa2.06□□□□□ -2.08
UBP11YKR098C GOR1P53839 350 aa2.06□□□□□ -2.08
UBP11YKR098C IBD2P53892 351 aa2.06□□□□□ -2.08
UBP11YKR098C SPR6Q01684 191 aa2.06□□□□□ -2.08
UBP11YKR098C CCE1Q03702 353 aa2.06□□□□□ -2.08
UBP11YKR098C MSC3Q05812 728 aa2.06□□□□□ -2.08
UBP11YKR098C STE23Q06010 1027 aa2.06□□□□□ -2.08
UBP11YKR098C THP3Q12049 470 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C YOP1Q12402 180 aa2.06□□□□□ -2.08
UBP11YKR098C CEX1Q12453 761 aa2.06□□□□□ -2.08
UBP11YKR098C VPS63O13549 108 aa2.06□□□□□ -2.08
UBP11YKR098C CBP2P03874 630 aaPredicted RBP2.06□□□□□ -2.08
UBP11YKR098C SSC1P0CS90 654 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C CAP2P13517 287 aa2.06□□□□□ -2.08
UBP11YKR098C DAL80P26343 269 aa2.06□□□□□ -2.08
UBP11YKR098C YEF1P32622 495 aa2.06□□□□□ -2.08
UBP11YKR098C YBP1P38315 674 aa2.06□□□□□ -2.08
UBP11YKR098C MDM31P38880 579 aa2.06□□□□□ -2.08
UBP11YKR098C JLP2P40206 208 aa2.06□□□□□ -2.08
UBP11YKR098C MPP10P47083 593 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C YDL186WP48568 277 aa2.06□□□□□ -2.08
UBP11YKR098C LSC1P53598 329 aaKnown RBP2.06□□□□□ -2.08
UBP11YKR098C YML122CQ03207 126 aa2.06□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 41.2 ms