RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	LEU4	P06208	619 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	OLE1	P21147	510 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	YSR3	P23501	404 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CRM1	P30822	1084 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	COX13	P32799	129 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CSE1	P33307	960 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
NMD3	YHR170W	CAF4	P36130	643 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	RPF2	P36160	344 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	YBR138C	P38277	524 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	UBA4	P38820	440 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	GDI1	P39958	451 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	YEL073C	P39974	107 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	AZF1	P41696	914 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	PUS4	P48567	403 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	IMA1	P53051	589 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	YGL108C	P53139	140 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	YGR015C	P53208	328 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	SUN4	P53616	420 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	BSC5	P53755	489 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	PRP38	Q00723	242 aa	Predicted RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	MET31	Q03081	177 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	ARG7	Q04728	441 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	BCH1	Q05029	724 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	YOL159C	Q08300	171 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	GPN2	Q08726	347 aa	Predicted RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	NFI1	Q12216	726 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	YPR011C	Q12251	326 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	RGT2	Q12300	763 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	SKM1	Q12469	655 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	MHT1	Q12525	324 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	SAS5	Q99314	248 aa		4.36	□□□□□ -1.71
NMD3	YHR170W	HRP1	Q99383	534 aa	Known RBP	4.36	□□□□□ -1.71
NMD3	YHR170W	ATP6	P00854	259 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	GCN4	P03069	281 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	STE3	P06783	470 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YKR104W	P0CE69	306 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	SPT15	P13393	240 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	SGV1	P23293	657 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	OCA4	P25366	362 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	SIN4	P32259	974 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	RMA1	P36001	430 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	YPT52	P36018	234 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	TDP1	P38319	544 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	INM1	P38710	295 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YHR127W	P38833	243 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	YER034W	P40022	185 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	YNL195C	P40168	261 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	BAP3	P41815	604 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YFR020W	P43600	232 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	NOP9	P47077	666 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	MDE1	P47095	244 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YJR030C	P47101	745 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	SGF73	P53165	657 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	COS6	P53344	381 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	MPS1	P54199	764 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	DLT1	Q04216	342 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YDR124W	Q04608	324 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	YHC1	Q05900	231 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	SAM4	Q08985	325 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	REX3	Q12090	404 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	RTK1	Q12100	620 aa	Predicted RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	RTN2	Q12443	393 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	ADF1	Q2V2Q1	113 aa		4.35	□□□□□ -1.71
NMD3	YHR170W	MEX67	Q99257	599 aa	Known RBP	4.35	□□□□□ -1.71
NMD3	YHR170W	TPK2	P06245	380 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	RPC40	P07703	335 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	LAT1	P12695	482 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	YAK1	P14680	807 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YAP1	P19880	650 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	PHO84	P25297	587 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	MGM101	P32787	269 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	ATO2	P32907	282 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	FRE2	P36033	711 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	TCD2	P36101	447 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	MRPL17	P36528	281 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	BMT2	P38278	337 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YLF2	P38746	405 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	FMP32	P43557	207 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	MPS3	P47069	682 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YJR149W	P47177	404 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	GTO1	P48239	356 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	DUO1	P53168	247 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	MTL1	P53214	551 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	ART5	P53244	586 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	ZRG17	P53735	605 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YNL260C	P53846	198 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	CIK1	Q01649	594 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	PEX25	Q02969	394 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YMR010W	Q03687	405 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	CCE1	Q03702	353 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	CTK1	Q03957	528 aa	Known RBP	4.34	□□□□□ -1.71
NMD3	YHR170W	HSP31	Q04432	237 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	YLR345W	Q06137	509 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	MCM21	Q06675	368 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	FRE5	Q08908	694 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	PFA4	Q12006	378 aa		4.34	□□□□□ -1.71
NMD3	YHR170W	RAS2	P01120	322 aa	Known RBP	4.33	□□□□□ -1.72
NMD3	YHR170W	SUI3	P09064	285 aa	Known RBP	4.33	□□□□□ -1.72
NMD3	YHR170W	STE50	P25344	346 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms