RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W PBP1P53297 722 aaKnown RBP4.5□□□□□ -1.69
VPS29YHR012W ATG4P53867 494 aa4.5□□□□□ -1.69
VPS29YHR012W DMA2P53924 522 aa4.5□□□□□ -1.69
VPS29YHR012W RPM2Q02773 1202 aa4.5□□□□□ -1.69
VPS29YHR012W ATG21Q02887 496 aa4.5□□□□□ -1.69
VPS29YHR012W YDR124WQ04608 324 aa4.5□□□□□ -1.69
VPS29YHR012W SMA2Q04658 369 aa4.5□□□□□ -1.69
VPS29YHR012W VPS74Q06385 345 aa4.5□□□□□ -1.69
VPS29YHR012W PUN1Q06991 263 aa4.5□□□□□ -1.69
VPS29YHR012W YOR223WQ12015 292 aa4.5□□□□□ -1.69
VPS29YHR012W SFG1Q12507 346 aa4.5□□□□□ -1.69
VPS29YHR012W CDC36P06100 191 aaPredicted RBP4.49□□□□□ -1.69
VPS29YHR012W DST1P07273 309 aa4.49□□□□□ -1.69
VPS29YHR012W RPL20AP0CX23 172 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W RPL20BP0CX24 172 aaPredicted RBP4.49□□□□□ -1.69
VPS29YHR012W STE12P13574 688 aa4.49□□□□□ -1.69
VPS29YHR012W GPI12P23797 304 aa4.49□□□□□ -1.69
VPS29YHR012W DBR1P24309 405 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W RVS161P25343 265 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W STP22P25604 385 aa4.49□□□□□ -1.69
VPS29YHR012W DHR2P36009 735 aaPredicted RBP4.49□□□□□ -1.69
VPS29YHR012W CAF4P36130 643 aa4.49□□□□□ -1.69
VPS29YHR012W GLG1P36143 616 aa4.49□□□□□ -1.69
VPS29YHR012W GRE3P38715 327 aaKnown RBP RIP-Chip data4.49□□□□□ -1.69not detected
VPS29YHR012W APE4P38821 490 aa4.49□□□□□ -1.69
VPS29YHR012W ATG7P38862 630 aa4.49□□□□□ -1.69
VPS29YHR012W SEC31P38968 1273 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W GIP2P40036 548 aa4.49□□□□□ -1.69
VPS29YHR012W MRPS18P42847 217 aa4.49□□□□□ -1.69
VPS29YHR012W UBP6P43593 499 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W BIT61P47041 543 aa4.49□□□□□ -1.69
VPS29YHR012W YJR154WP47181 346 aa4.49□□□□□ -1.69
VPS29YHR012W ALG12P53730 551 aa4.49□□□□□ -1.69
VPS29YHR012W ATP25Q03153 612 aa4.49□□□□□ -1.69
VPS29YHR012W YLL007CQ07799 665 aa4.49□□□□□ -1.69
VPS29YHR012W TMA46Q12000 345 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W BAG7Q12128 409 aa4.49□□□□□ -1.69
VPS29YHR012W PRP46Q12417 451 aaPredicted RBP4.49□□□□□ -1.69
VPS29YHR012W CDC39P25655 2108 aaKnown RBP4.49□□□□□ -1.69
VPS29YHR012W YPR096CO13587 100 aa4.48□□□□□ -1.69
VPS29YHR012W TRP3P00937 484 aa4.48□□□□□ -1.69
VPS29YHR012W YFR010W-AP0C5N0 62 aa4.48□□□□□ -1.69
VPS29YHR012W MCM1P11746 286 aa4.48□□□□□ -1.69
VPS29YHR012W AAC3P18238 307 aa4.48□□□□□ -1.69
VPS29YHR012W DAP2P18962 818 aa4.48□□□□□ -1.69
VPS29YHR012W PBN1P25580 416 aa4.48□□□□□ -1.69
VPS29YHR012W SBA1P28707 216 aaKnown RBP4.48□□□□□ -1.69
VPS29YHR012W CAT2P32796 670 aaKnown RBP4.48□□□□□ -1.69
VPS29YHR012W FRE2P36033 711 aa4.48□□□□□ -1.69
VPS29YHR012W AUR1P36107 401 aaPredicted RBP4.48□□□□□ -1.69
VPS29YHR012W YKR073CP36153 106 aa4.48□□□□□ -1.69
VPS29YHR012W SCO2P38072 301 aa4.48□□□□□ -1.69
VPS29YHR012W FES1P38260 290 aa4.48□□□□□ -1.69
VPS29YHR012W SHU2P38957 223 aa4.48□□□□□ -1.69
VPS29YHR012W XBP1P40489 647 aa4.48□□□□□ -1.69
VPS29YHR012W AAD10P47182 288 aa4.48□□□□□ -1.69
VPS29YHR012W ECL1P48235 211 aa4.48□□□□□ -1.69
VPS29YHR012W YNL010WP53981 241 aaKnown RBP4.48□□□□□ -1.69
VPS29YHR012W RNT1Q02555 471 aa4.48□□□□□ -1.69
VPS29YHR012W MSC1Q03104 513 aa4.48□□□□□ -1.69
VPS29YHR012W TVP15Q03860 143 aa4.48□□□□□ -1.69
VPS29YHR012W DCR2Q05924 578 aa4.48□□□□□ -1.69
VPS29YHR012W HNT3Q08702 217 aa4.48□□□□□ -1.69
VPS29YHR012W RCN2Q12044 265 aa4.48□□□□□ -1.69
VPS29YHR012W YOR097CQ12274 175 aaPredicted RBP4.48□□□□□ -1.69
VPS29YHR012W MTR10Q99189 972 aa4.48□□□□□ -1.69
VPS29YHR012W GPH1P06738 902 aaKnown RBP4.47□□□□□ -1.69
VPS29YHR012W ARF1P11076 181 aaKnown RBP4.47□□□□□ -1.69
VPS29YHR012W ERD1P16151 362 aa4.47□□□□□ -1.69
VPS29YHR012W KRE6P32486 720 aa4.47□□□□□ -1.69
VPS29YHR012W LOT5P34234 306 aa4.47□□□□□ -1.69
VPS29YHR012W OAF3P36023 863 aa4.47□□□□□ -1.69
VPS29YHR012W TPO5P36029 618 aa4.47□□□□□ -1.69
VPS29YHR012W YJL068CP40363 299 aa4.47□□□□□ -1.69
VPS29YHR012W AYR1P40471 297 aa4.47□□□□□ -1.69
VPS29YHR012W MAD3P47074 515 aa4.47□□□□□ -1.69
VPS29YHR012W MUP1P50276 574 aa4.47□□□□□ -1.69
VPS29YHR012W RHO4Q00246 291 aa4.47□□□□□ -1.69
VPS29YHR012W RNY1Q02933 434 aaKnown RBP4.47□□□□□ -1.69
VPS29YHR012W PLM2Q04383 521 aa4.47□□□□□ -1.69
VPS29YHR012W ERB1Q04660 807 aaKnown RBP4.47□□□□□ -1.69
VPS29YHR012W FAR8Q05040 523 aa4.47□□□□□ -1.69
VPS29YHR012W ATG38Q05789 226 aaKnown RBP4.47□□□□□ -1.69
VPS29YHR012W FAR10Q06001 478 aa4.47□□□□□ -1.69
VPS29YHR012W COS7Q07788 383 aa4.47□□□□□ -1.69
VPS29YHR012W PSF1Q12488 208 aa4.47□□□□□ -1.69
VPS29YHR012W SKS1Q12505 502 aa4.47□□□□□ -1.69
VPS29YHR012W TAD3Q9URQ3 322 aa4.47□□□□□ -1.69
VPS29YHR012W RAS2P01120 322 aaKnown RBP4.46□□□□□ -1.7
VPS29YHR012W YHR214C-DP0CX93 97 aa4.46□□□□□ -1.7
VPS29YHR012W MRP13P12686 339 aa4.46□□□□□ -1.7
VPS29YHR012W CTR86P25355 563 aa4.46□□□□□ -1.7
VPS29YHR012W DMC1P25453 334 aa4.46□□□□□ -1.7
VPS29YHR012W ERG9P29704 444 aa4.46□□□□□ -1.7
VPS29YHR012W PEP12P32854 288 aa4.46□□□□□ -1.7
VPS29YHR012W PTR2P32901 601 aa4.46□□□□□ -1.7
VPS29YHR012W YDR089WP38966 869 aa4.46□□□□□ -1.7
VPS29YHR012W AIM2P39721 246 aa4.46□□□□□ -1.7
VPS29YHR012W PFK26P40433 827 aaKnown RBP4.46□□□□□ -1.7
VPS29YHR012W TED1P40533 473 aa4.46□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms