RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT3	YDR392W	CAK1	P43568	368 aa	Predicted RBP	4.14	□□□□□ -1.75
SPT3	YDR392W	YGR127W	P53275	312 aa		4.14	□□□□□ -1.75
SPT3	YDR392W	UGO1	Q03327	502 aa		4.14	□□□□□ -1.75
SPT3	YDR392W	PLM2	Q04383	521 aa		4.14	□□□□□ -1.75
SPT3	YDR392W	APC4	Q04601	652 aa		4.14	□□□□□ -1.75
SPT3	YDR392W	FCY22	Q12119	530 aa		4.14	□□□□□ -1.75
SPT3	YDR392W	PRP46	Q12417	451 aa	Predicted RBP	4.14	□□□□□ -1.75
SPT3	YDR392W	ILV5	P06168	395 aa	Known RBP	4.13	□□□□□ -1.75
SPT3	YDR392W	CWH43	P25618	953 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	MRPL9	P31334	269 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	BEM3	P32873	1128 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	PEX6	P33760	1030 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
SPT3	YDR392W	FLC2	P39719	783 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	PRM2	P40534	656 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	YGR067C	P53243	804 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	YOR012W	Q12351	137 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	WTM1	Q12363	437 aa	Known RBP	4.13	□□□□□ -1.75
SPT3	YDR392W	RAX2	Q12465	1220 aa		4.13	□□□□□ -1.75
SPT3	YDR392W	MET8	P15807	274 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	CLB1	P24868	471 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ROX1	P25042	368 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ITR2	P30606	609 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ATP11	P32453	318 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	IME2	P32581	645 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	LDB7	P38210	180 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	YBR220C	P38318	560 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	YHI9	P38765	294 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	RGI2	P40188	164 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ATM1	P40416	690 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	CIN1	P40987	1014 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	PHO86	P46956	311 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ATP23	P53722	227 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	VPS9	P54787	451 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	ACS1	Q01574	713 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	RAF1	Q06891	181 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	YPL216W	Q08964	1102 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	YLR125W	Q12138	136 aa		4.12	□□□□□ -1.75
SPT3	YDR392W	YSF3	P0C074	85 aa	Predicted RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	PCL2	P25693	308 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	RPS5	P26783	225 aa	Known RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	TPS2	P31688	896 aa	Known RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	YEF1	P32622	495 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	SNU114	P36048	1008 aa	Known RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	YBR071W	P38243	211 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	APD1	P38281	316 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	UTP25	P40498	721 aa	Known RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	YIL054W	P40524	105 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	ARF3	P40994	183 aa	RIP-Chip data	4.11	□□□□□ -1.75	RIP-Chip
SPT3	YDR392W	YJR141W	P47172	347 aa	Predicted RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	CWC22	P53333	577 aa	Known RBP	4.11	□□□□□ -1.75
SPT3	YDR392W	OSH6	Q02201	448 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	RPM2	Q02773	1202 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	YLR446W	Q06204	433 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	YOS9	Q99220	542 aa		4.11	□□□□□ -1.75
SPT3	YDR392W	LEU4	P06208	619 aa	Known RBP	4.1	□□□□□ -1.75
SPT3	YDR392W	DAP2	P18962	818 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	IDH2	P28241	369 aa	Known RBP	4.1	□□□□□ -1.75
SPT3	YDR392W	TPO5	P36029	618 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	HSM3	P38348	480 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	SMC2	P38989	1170 aa	Known RBP	4.1	□□□□□ -1.75
SPT3	YDR392W	ERP2	P39704	215 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	SOK1	P40317	901 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	YPL077C	Q02831	240 aa		4.1	□□□□□ -1.75
SPT3	YDR392W	YPR174C	Q06616	221 aa	Predicted RBP	4.1	□□□□□ -1.75
SPT3	YDR392W	KAR3	P17119	729 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	ARG1	P22768	420 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	HXT4	P32467	576 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	IMP3	P32899	183 aa	Predicted RBP	4.09	□□□□□ -1.75
SPT3	YDR392W	YPT52	P36018	234 aa	Known RBP	4.09	□□□□□ -1.75
SPT3	YDR392W	MNT3	P40549	630 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	RRT5	P43607	289 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	PGU1	P47180	361 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	IMA1	P53051	589 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	YGR066C	P53242	292 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	EFM6	P53970	246 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	ESA1	Q08649	445 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	RDR1	Q08904	546 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	YDR056C	Q12025	205 aa		4.09	□□□□□ -1.75
SPT3	YDR392W	YJL197C-A	P0C5P0	93 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	SFL1	P20134	766 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	RPC34	P32910	317 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	YKL091C	P33324	310 aa	Known RBP	4.08	□□□□□ -1.76
SPT3	YDR392W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
SPT3	YDR392W	YHR127W	P38833	243 aa	Known RBP	4.08	□□□□□ -1.76
SPT3	YDR392W	ALG8	P40351	577 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	PXA1	P41909	870 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	PIL1	P53252	339 aa	Known RBP	4.08	□□□□□ -1.76
SPT3	YDR392W	CIK1	Q01649	594 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	CSI2	Q08054	341 aa		4.08	□□□□□ -1.76
SPT3	YDR392W	MRS3	P10566	314 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	MSI1	P13712	422 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	CLB2	P24869	491 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	VMA11	P32842	164 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	RRN10	P38204	145 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	UTP18	P40362	594 aa	Predicted RBP	4.07	□□□□□ -1.76
SPT3	YDR392W	MSY1	P48527	492 aa		4.07	□□□□□ -1.76
SPT3	YDR392W	RPN9	Q04062	393 aa	Known RBP	4.07	□□□□□ -1.76
SPT3	YDR392W	SXM1	Q04175	944 aa	Known RBP	4.07	□□□□□ -1.76
SPT3	YDR392W	SRL2	Q12020	392 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 54.5 ms