RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	GPI1	P53306	609 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	TDA7	P53882	636 aa	Predicted RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	GIP3	Q03016	1276 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	ARX1	Q03862	593 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	RAD33	Q04231	177 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	YLR413W	Q06689	675 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	DTD1	Q07648	150 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	ADF1	Q2V2Q1	113 aa		4.86	□□□□□ -1.63
SCM3	YDL139C	BEM2	P39960	2167 aa	Known RBP	4.86	□□□□□ -1.63
SCM3	YDL139C	RAP1	P11938	827 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	GCD2	P12754	651 aa	Predicted RBP	4.85	□□□□□ -1.63
SCM3	YDL139C	APA1	P16550	321 aa	Known RBP	4.85	□□□□□ -1.63
SCM3	YDL139C	HOP1	P20050	605 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	SPB1	P25582	841 aa	Predicted RBP	4.85	□□□□□ -1.63
SCM3	YDL139C	PHO91	P27514	894 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	NTG1	P31378	399 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
SCM3	YDL139C	PXA2	P34230	853 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	MOH1	P38191	138 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	COS111	P38308	924 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	INM1	P38710	295 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	RPH1	P39956	796 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	HIS6	P40545	261 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	IMA5	P40884	581 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	NAS6	P50086	228 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	YGR015C	P53208	328 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	GRX5	Q02784	150 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	SMP3	Q04174	516 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	CIA1	Q05583	330 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	ARR1	Q06596	294 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	BUD7	Q08754	746 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	DAP1	Q12091	152 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	YPR022C	Q12139	1133 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	RGT2	Q12300	763 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	NKP1	Q12493	238 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	YLR111W	Q12528	110 aa		4.85	□□□□□ -1.63
SCM3	YDL139C	CBP2	P03874	630 aa	Predicted RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	HEM2	P05373	342 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	TPK2	P06245	380 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	SIR3	P06701	978 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	STE3	P06783	470 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	UNG1	P12887	359 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	RPB4	P20433	221 aa	Predicted RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	SYN8	P31377	255 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	LHP1	P33399	275 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	OAR1	P35731	278 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	STP2	P38704	541 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	LRP1	P38801	184 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	UTP9	P38882	575 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	RGI1	P40043	161 aa	Predicted RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	PIG2	P40187	538 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	YRB2	P40517	327 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	MAD2	P40958	196 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	ASK10	P48361	1146 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	DIA3	P52290	468 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	SYF2	P53277	215 aa	Predicted RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	SMA1	Q02651	245 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	YMR178W	Q03219	274 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	GPI11	Q06636	219 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	YFT2	Q06676	274 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	NSE1	Q07913	336 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	YPR011C	Q12251	326 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	YOL114C	Q12322	202 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	WTM1	Q12363	437 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	AHA1	Q12449	350 aa	Known RBP	4.84	□□□□□ -1.63
SCM3	YDL139C	YKL033W-A	Q86ZR7	236 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	SAS5	Q99314	248 aa		4.84	□□□□□ -1.63
SCM3	YDL139C	MSS18	P08593	268 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	RNA1	P11745	407 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	MSS116	P15424	664 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	RVS161	P25343	265 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	PUP3	P25451	205 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	BUD14	P27637	709 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	UBC8	P28263	218 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	YIM1	P28625	365 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	SAC1	P32368	623 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	MEI5	P32489	222 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	CYS4	P32582	507 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	TFB1	P32776	642 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	STB6	P36085	766 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	YBR285W	P38354	144 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	YHR127W	P38833	243 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	MET30	P39014	640 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	FMP52	P40008	231 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	MPM1	P40364	252 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	QRI7	P43122	407 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	MPS3	P47069	682 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	PUS4	P48567	403 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	YDL183C	P48569	320 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	CDH1	P53197	566 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	PEF1	P53238	335 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	IGO1	P53897	168 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	YKU80	Q04437	629 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	SAM4	Q08985	325 aa	Known RBP	4.83	□□□□□ -1.64
SCM3	YDL139C	YDR056C	Q12025	205 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	DIN7	Q12086	430 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	YLR126C	Q12288	251 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	PSY3	Q12318	242 aa		4.83	□□□□□ -1.64
SCM3	YDL139C	RAS2	P01120	322 aa	Known RBP	4.82	□□□□□ -1.64
SCM3	YDL139C	COR1	P07256	457 aa		4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms