RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PCYT2Q99447 389 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 HIPK3Q9H422 1215 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 SETD4Q9NVD3 440 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 GTF2IRD1Q9UHL9 959 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 TBX21Q9UL17 535 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 UMODL1Q5DID0 1318 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 WDR81Q562E7 1941 aa12.52□□□□□ -0.4
LIG1-211ENST00000596457 MYH9P35579 1960 aaKnown RBP12.52□□□□□ -0.4
LIG1-211ENST00000596457 KIF28PB7ZC32 967 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 BAG4O95429 457 aaKnown RBP12.52□□□□□ -0.41
LIG1-211ENST00000596457 PSAPP07602 524 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 GCFC2P16383 781 aaKnown RBP12.52□□□□□ -0.41
LIG1-211ENST00000596457 MCM7P33993 719 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 KRT76Q01546 638 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 CUL4AQ13619 759 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 HIC1Q14526 733 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 PPP4R3AQ6IN85 833 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 ZNF746Q6NUN9 644 aaPredicted RBP12.52□□□□□ -0.41
LIG1-211ENST00000596457 MOXD1Q6UVY6 613 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 ABHD15Q6UXT9 468 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 MIER3Q7Z3K6 550 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 RETREG2Q8NC44 543 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 SPRYD3Q8NCJ5 442 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 ATP6V0A1Q93050 837 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 FAM122AQ96E09 287 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 MBOAT7Q96N66 472 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 FOXP1Q9H334 677 aaPredicted RBP12.52□□□□□ -0.41
LIG1-211ENST00000596457 UNC45AQ9H3U1 944 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 ZNF302Q9NR11 478 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 ERAP1Q9NZ08 941 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 TRPC6Q9Y210 931 aa12.52□□□□□ -0.41
LIG1-211ENST00000596457 SPTBN5Q9NRC6 3674 aaKnown RBP12.52□□□□□ -0.41
LIG1-211ENST00000596457 WNT7AO00755 349 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 LGR5O75473 907 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 PSMD10O75832 226 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 ATG7O95352 703 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 HSP90AA1P07900 732 aaKnown RBP12.51□□□□□ -0.41
LIG1-211ENST00000596457 FPGSQ05932 587 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 PLCB4Q15147 1175 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 ZNF174Q15697 407 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 PDXDC2PQ6P474 469 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 SESTD1Q86VW0 696 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 NOSTRINQ8IVI9 506 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 CCDC60Q8IWA6 550 aaPredicted RBP12.51□□□□□ -0.41
LIG1-211ENST00000596457 TMEM199Q8N511 208 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 ETNPPLQ8TBG4 499 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 SCLYQ96I15 445 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 RIT2Q99578 217 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 NOC4LQ9BVI4 516 aaKnown RBP12.51□□□□□ -0.41
LIG1-211ENST00000596457 DISC1Q9NRI5 854 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 GABBR1Q9UBS5 961 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 NOL7Q9UMY1 257 aaKnown RBP12.51□□□□□ -0.41
LIG1-211ENST00000596457 PCDHA10Q9Y5I2 948 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 EMSYQ7Z589 1322 aa12.51□□□□□ -0.41
LIG1-211ENST00000596457 POTEB3A0JP26 581 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 VPS37CA5D8V6 355 aaPredicted RBP12.5□□□□□ -0.41
LIG1-211ENST00000596457 WDR64B1ANS9 1081 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 TREHO43280 583 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 NEMFO60524 1076 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 ACRP10323 421 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 GNAT1P11488 350 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 CSF2RAP15509 400 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 TXKP42681 527 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 PPFIA1Q13136 1202 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 BFSP2Q13515 415 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 GRIK4Q16099 956 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 CALCRLQ16602 461 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 NCAPH2Q6IBW4 605 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 MFSD5Q6N075 450 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 POTEBQ6S5H4 581 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 PLPPR4Q7Z2D5 763 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 SMAP1Q8IYB5 467 aaPredicted RBP12.5□□□□□ -0.41
LIG1-211ENST00000596457 CCDC155Q8N6L0 562 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 TRAPPC12Q8WVT3 735 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 SNX21Q969T3 373 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 SCN5AQ14524 2016 aa12.5□□□□□ -0.41
LIG1-211ENST00000596457 INSRRP14616 1297 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 THPOP40225 353 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 JAK3P52333 1124 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 PTK7Q13308 1070 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 NBR1Q14596 966 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 TTC38Q5R3I4 469 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 FAM109BQ6ICB4 259 aaPredicted RBP12.49□□□□□ -0.41
LIG1-211ENST00000596457 DEFB128Q7Z7B8 93 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 SLFN12Q8IYM2 578 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 DHX38Q92620 1227 aaKnown RBP12.49□□□□□ -0.41
LIG1-211ENST00000596457 HAS1Q92839 578 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 ZBTB10Q96DT7 871 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 FAM20AQ96MK3 541 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 KCNMB3Q9NPA1 279 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 MTMR10Q9NXD2 777 aa12.49□□□□□ -0.41
LIG1-211ENST00000596457 NRCAMQ92823 1304 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 IGKV6D-21A0A0A0MT36 114 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 RBAK-RBAKDNI3L0D1 243 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 EML1O00423 815 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 TBX3O15119 743 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 ATP4AP20648 1035 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 U2AF2P26368 475 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIG1-211ENST00000596457 SFNP31947 248 aa12.48□□□□□ -0.41
LIG1-211ENST00000596457 EPHB4P54760 987 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms