RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CYP26A1O43174 497 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 A1BGP04217 495 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 MMP10P09238 476 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 NAT2P11245 290 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 GYS1P13807 737 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 COPB2P35606 906 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 EIF5P55010 431 aaKnown RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 EIF4A1P60842 406 aaKnown RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 GPR162Q16538 588 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 TMEM95Q3KNT9 176 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 AXDND1Q5T1B0 1012 aaPredicted RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 SMIM5Q71RC9 77 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 EEPD1Q7L9B9 569 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 ADAT2Q7Z6V5 191 aaKnown RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 PPFIBP1Q86W92 1011 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 NGEFQ8N5V2 710 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 SVIPQ8NHG7 77 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 THAP3Q8WTV1 239 aaPredicted RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 KLHL6Q8WZ60 621 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 VWCEQ96DN2 955 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 THUMPD2Q9BTF0 503 aaKnown RBP7.38□□□□□ -1.23
VPS53-212ENST00000572259 NRBP1Q9UHY1 535 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 ZNF652Q9Y2D9 606 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 USP16Q9Y5T5 823 aa7.38□□□□□ -1.23
VPS53-212ENST00000572259 LRRN2O75325 713 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 ITIH2P19823 946 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 POU3F3P20264 500 aaPredicted RBP7.37□□□□□ -1.23
VPS53-212ENST00000572259 GNAI1P63096 354 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 POU5F1Q01860 360 aaKnown RBP7.37□□□□□ -1.23
VPS53-212ENST00000572259 AUHQ13825 339 aaKnown RBP7.37□□□□□ -1.23
VPS53-212ENST00000572259 NBPF9Q3BBW0 867 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 NOL9Q5SY16 702 aaKnown RBP7.37□□□□□ -1.23
VPS53-212ENST00000572259 CCDC174Q6PII3 467 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 AMIGO3Q86WK7 504 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 DDX42Q86XP3 938 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS53-212ENST00000572259 C7orf61Q8IZ16 206 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 MYO1HQ8N1T3 1032 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 MFSD4AQ8N468 514 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 ZHX3Q9H4I2 956 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 PIM2Q9P1W9 311 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 LZTS1Q9Y250 596 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 PCDHB12Q9Y5F1 795 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 CHD4Q14839 1912 aa7.37□□□□□ -1.23
VPS53-212ENST00000572259 SHTN1A0MZ66 631 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 ANKRD34BA5PLL1 514 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 PRR33A8MZF0 331 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 CHL1O00533 1208 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 TBX3O15119 743 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 RASGRP1O95267 797 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 EIF2S2P20042 333 aaKnown RBP7.36□□□□□ -1.23
VPS53-212ENST00000572259 STAT3P40763 770 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 TGFB2P61812 414 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 MCL1Q07820 350 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 L1TD1Q5T7N2 865 aaKnown RBP7.36□□□□□ -1.23
VPS53-212ENST00000572259 DCAF15Q66K64 600 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 KIF6Q6ZMV9 814 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 C22orf34Q6ZV56 151 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 ZDHHC13Q8IUH4 622 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 IFNL3Q8IZI9 196 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 JMYQ8N9B5 988 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 FAM181AQ8N9Y4 354 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 HAUS7Q99871 368 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 GBP3Q9H0R5 595 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 MKNK2Q9HBH9 465 aa7.36□□□□□ -1.23
VPS53-212ENST00000572259 SRP68Q9UHB9 627 aaKnown RBP7.36□□□□□ -1.23
VPS53-212ENST00000572259 CCDC163A0A0D9SF12 145 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 EPHX1P07099 455 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 HOXB7P09629 217 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 ZNF865P0CJ78 1059 aaPredicted RBP7.35□□□□□ -1.23
VPS53-212ENST00000572259 CALRP27797 417 aaKnown RBP7.35□□□□□ -1.23
VPS53-212ENST00000572259 TM4SF1P30408 202 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 SOX5P35711 763 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 OXCT1P55809 520 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 LRRC41Q15345 812 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 CLEC16AQ2KHT3 1053 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 GRAMD1BQ3KR37 738 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 SV2CQ496J9 727 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 ANKRD39Q53RE8 183 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 PRSS36Q5K4E3 855 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 C10orf62Q5T681 223 aaPredicted RBP7.35□□□□□ -1.23
VPS53-212ENST00000572259 THNSL2Q86YJ6 484 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 PDILTQ8N807 584 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 DTWD2Q8NBA8 298 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 PIWIL2Q8TC59 973 aaKnown RBP7.35□□□□□ -1.23
VPS53-212ENST00000572259 PPP1R14AQ96A00 147 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 MFSD3Q96ES6 412 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 Q96M66 194 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.35□□□□□ -1.23
VPS53-212ENST00000572259 CAAP1Q9H8G2 361 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 CAPN6Q9Y6Q1 641 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 KDM3BQ7LBC6 1761 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 C4AP0C0L4 1744 aa7.35□□□□□ -1.23
VPS53-212ENST00000572259 ERVV-1B6SEH8 477 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 EPB41L2O43491 1005 aaKnown RBP7.34□□□□□ -1.23
VPS53-212ENST00000572259 SUSD5O60279 629 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 PPM1BO75688 479 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 ASMTLO95671 621 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 SERPINB2P05120 415 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 ITGA4P13612 1032 aa7.34□□□□□ -1.23
VPS53-212ENST00000572259 CD247P20963 164 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms