RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 AEBP2Q6ZN18 517 aaPredicted RBP22.98■■□□□ 1.27
VPS53-212ENST00000572259 CHIC1Q5VXU3 224 aa22.79■■□□□ 1.24
VPS53-212ENST00000572259 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
VPS53-212ENST00000572259 SENP3Q9H4L4 574 aaPredicted RBP19.52■□□□□ 0.72
VPS53-212ENST00000572259 POTEDQ86YR6 584 aa18.73■□□□□ 0.59
VPS53-212ENST00000572259 PLPPR3Q6T4P5 718 aa18.69■□□□□ 0.58
VPS53-212ENST00000572259 FOXD1Q16676 465 aa18.05■□□□□ 0.48
VPS53-212ENST00000572259 ADRA2BP18089 450 aa17.63■□□□□ 0.41
VPS53-212ENST00000572259 PPP6R1Q9UPN7 881 aa17.59■□□□□ 0.41
VPS53-212ENST00000572259 PIAS4Q8N2W9 510 aaPredicted RBP17.14■□□□□ 0.33
VPS53-212ENST00000572259 MSH5O43196 834 aa16.87■□□□□ 0.29
VPS53-212ENST00000572259 PPP4R3CPQ6ZMV5 832 aa16.49■□□□□ 0.23
VPS53-212ENST00000572259 KCNA4P22459 653 aa16.43■□□□□ 0.22
VPS53-212ENST00000572259 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
VPS53-212ENST00000572259 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
VPS53-212ENST00000572259 CNKSR2Q8WXI2 1034 aa15.97■□□□□ 0.15
VPS53-212ENST00000572259 MAPK8IP2Q13387 824 aaPredicted RBP15.9■□□□□ 0.14
VPS53-212ENST00000572259 NPM3O75607 178 aaKnown RBP15.88■□□□□ 0.13
VPS53-212ENST00000572259 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
VPS53-212ENST00000572259 EHMT2Q96KQ7 1210 aa15.66■□□□□ 0.1
VPS53-212ENST00000572259 DMRT2Q9Y5R5 561 aa15.61■□□□□ 0.09
VPS53-212ENST00000572259 RNF216Q9NWF9 866 aaPredicted RBP15.57■□□□□ 0.08
VPS53-212ENST00000572259 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
VPS53-212ENST00000572259 DNAJC5BQ9UF47 199 aa15.32■□□□□ 0.04
VPS53-212ENST00000572259 CSRNP3Q8WYN3 585 aa15.28■□□□□ 0.04
VPS53-212ENST00000572259 CACNB1Q02641 598 aaPredicted RBP15.22■□□□□ 0.03
VPS53-212ENST00000572259 ZBTB22O15209 634 aa15.07■□□□□ 0
VPS53-212ENST00000572259 FOXD4L1Q9NU39 408 aa15.06■□□□□ 0
VPS53-212ENST00000572259 DCAF8L1A6NGE4 600 aa15.03■□□□□ -0
VPS53-212ENST00000572259 SLC4A2P04920 1241 aa14.89□□□□□ -0.03
VPS53-212ENST00000572259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS53-212ENST00000572259 MYCNP04198 464 aaPredicted RBP14.71□□□□□ -0.05
VPS53-212ENST00000572259 ATXN8OSP0DMR3 200 aa14.51□□□□□ -0.09
VPS53-212ENST00000572259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
VPS53-212ENST00000572259 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
VPS53-212ENST00000572259 U3KPZ7 1027 aaPredicted RBP14.48□□□□□ -0.09
VPS53-212ENST00000572259 SAMD1Q6SPF0 538 aaPredicted RBP14.42□□□□□ -0.1
VPS53-212ENST00000572259 RNF39Q9H2S5 420 aa14.41□□□□□ -0.1
VPS53-212ENST00000572259 POTEHQ6S545 545 aa14.36□□□□□ -0.11
VPS53-212ENST00000572259 APLP2Q06481 763 aa14.28□□□□□ -0.12
VPS53-212ENST00000572259 ATF5Q9Y2D1 282 aaPredicted RBP14.24□□□□□ -0.13
VPS53-212ENST00000572259 C1QBPQ07021 282 aaKnown RBP14.07□□□□□ -0.16
VPS53-212ENST00000572259 ZNF219Q9P2Y4 722 aaPredicted RBP14.04□□□□□ -0.16
VPS53-212ENST00000572259 TRHP20396 242 aaPredicted RBP14□□□□□ -0.17
VPS53-212ENST00000572259 CAPN15O75808 1086 aa13.99□□□□□ -0.17
VPS53-212ENST00000572259 SPINK5Q9NQ38 1064 aaPredicted RBP13.99□□□□□ -0.17
VPS53-212ENST00000572259 FKBP8Q14318 412 aa13.85□□□□□ -0.19
VPS53-212ENST00000572259 POLA2Q14181 598 aa13.81□□□□□ -0.2
VPS53-212ENST00000572259 ABCB7O75027 752 aa13.72□□□□□ -0.21
VPS53-212ENST00000572259 FBLN2P98095 1184 aa13.72□□□□□ -0.21
VPS53-212ENST00000572259 ZBTB12Q9Y330 459 aaPredicted RBP13.63□□□□□ -0.23
VPS53-212ENST00000572259 MKRN4PQ13434 485 aaPredicted RBP13.62□□□□□ -0.23
VPS53-212ENST00000572259 DSG3P32926 999 aa13.61□□□□□ -0.23
VPS53-212ENST00000572259 NISCHQ9Y2I1 1504 aa13.58□□□□□ -0.24
VPS53-212ENST00000572259 SPDYE4A6NLX3 237 aa13.55□□□□□ -0.24
VPS53-212ENST00000572259 FBXO3Q9UK99 471 aa13.31□□□□□ -0.28
VPS53-212ENST00000572259 OSCARQ8IYS5 282 aa13.3□□□□□ -0.28
VPS53-212ENST00000572259 ZNF692Q9BU19 519 aaPredicted RBP13.29□□□□□ -0.28
VPS53-212ENST00000572259 SPDYE2BA6NHP3 402 aa13.26□□□□□ -0.29
VPS53-212ENST00000572259 SPDYE6P0CI01 402 aa13.26□□□□□ -0.29
VPS53-212ENST00000572259 SPDYE2Q495Y8 402 aa13.26□□□□□ -0.29
VPS53-212ENST00000572259 PROM2Q8N271 834 aa13.26□□□□□ -0.29
VPS53-212ENST00000572259 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
VPS53-212ENST00000572259 SSUH2Q9Y2M2 353 aa13.14□□□□□ -0.31
VPS53-212ENST00000572259 SLC24A1O60721 1099 aa13.13□□□□□ -0.31
VPS53-212ENST00000572259 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS53-212ENST00000572259 RTN4Q9NQC3 1192 aaKnown RBP13.09□□□□□ -0.31
VPS53-212ENST00000572259 VASPP50552 380 aaPredicted RBP13.07□□□□□ -0.32
VPS53-212ENST00000572259 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
VPS53-212ENST00000572259 STAG3Q9UJ98 1225 aa12.99□□□□□ -0.33
VPS53-212ENST00000572259 AKT1S1Q96B36 256 aa12.9□□□□□ -0.34
VPS53-212ENST00000572259 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
VPS53-212ENST00000572259 PLCD3Q8N3E9 789 aa12.88□□□□□ -0.35
VPS53-212ENST00000572259 SP7Q8TDD2 431 aaPredicted RBP12.88□□□□□ -0.35
VPS53-212ENST00000572259 MIER1Q8N108 512 aa12.86□□□□□ -0.35
VPS53-212ENST00000572259 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
VPS53-212ENST00000572259 PLEKHG5O94827 1062 aa12.82□□□□□ -0.36
VPS53-212ENST00000572259 SPDYE1Q8NFV5 336 aaPredicted RBP12.81□□□□□ -0.36
VPS53-212ENST00000572259 CLEC11AQ9Y240 323 aa12.78□□□□□ -0.36
VPS53-212ENST00000572259 REM2Q8IYK8 340 aaPredicted RBP12.77□□□□□ -0.37
VPS53-212ENST00000572259 SPOCK2Q92563 424 aa12.74□□□□□ -0.37
VPS53-212ENST00000572259 ZBTB47Q9UFB7 747 aaPredicted RBP12.71□□□□□ -0.37
VPS53-212ENST00000572259 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
VPS53-212ENST00000572259 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
VPS53-212ENST00000572259 PITPNM1O00562 1244 aa12.61□□□□□ -0.39
VPS53-212ENST00000572259 PKD2Q13563 968 aa12.57□□□□□ -0.4
VPS53-212ENST00000572259 DCAF8L2P0C7V8 631 aa12.53□□□□□ -0.4
VPS53-212ENST00000572259 CREBZFQ9NS37 354 aa12.53□□□□□ -0.4
VPS53-212ENST00000572259 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
VPS53-212ENST00000572259 ECM2O94769 699 aaPredicted RBP12.51□□□□□ -0.41
VPS53-212ENST00000572259 GSE1Q14687 1217 aa12.43□□□□□ -0.42
VPS53-212ENST00000572259 NPM1P06748 294 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS53-212ENST00000572259 MNX1P50219 401 aaPredicted RBP12.41□□□□□ -0.42
VPS53-212ENST00000572259 NUBP1P53384 320 aa12.41□□□□□ -0.42
VPS53-212ENST00000572259 DCAF8Q5TAQ9 597 aa12.41□□□□□ -0.42
VPS53-212ENST00000572259 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
VPS53-212ENST00000572259 TRIM41Q8WV44 630 aa12.38□□□□□ -0.43
VPS53-212ENST00000572259 FAM212AQ96EL1 285 aa12.37□□□□□ -0.43
VPS53-212ENST00000572259 PRKAR2AP13861 404 aaKnown RBP12.33□□□□□ -0.44
VPS53-212ENST00000572259 RGL2O15211 777 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms