RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 CASP2P42575 452 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 CBX5P45973 191 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 OLR1P78380 273 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 RELQ04864 619 aaPredicted RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 TYRO3Q06418 890 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 STK3Q13188 491 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 RAPGEF1Q13905 1077 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 CYLC2Q14093 348 aaPredicted RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 FAM133BQ5BKY9 247 aaKnown RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 DAB2IPQ5VWQ8 1189 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 KIAA1614Q5VZ46 1190 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 PPP4R4Q6NUP7 873 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 DUS1LQ6P1R4 473 aaKnown RBP7.05□□□□□ -1.28
MCF2-205ENST00000437564 PPP1R21Q6ZMI0 780 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 RUFY4Q6ZNE9 571 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 KRT28Q7Z3Y7 464 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 CROCCP3Q8IVE0 287 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 ALDH16A1Q8IZ83 802 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 SPICE1Q8N0Z3 855 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 ANKRD53Q8N9V6 530 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 SPATA18Q8TC71 538 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 ATP8B4Q8TF62 1192 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 SYT15Q9BQS2 421 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 CEP44Q9C0F1 390 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 SCPEP1Q9HB40 452 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 CBX8Q9HC52 389 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 TIMMDC1Q9NPL8 285 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 HMGXB4Q9UGU5 601 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 PGAP2Q9UHJ9 254 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 HPCAL4Q9UM19 191 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 HEY1Q9Y5J3 304 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 NOX1Q9Y5S8 564 aa7.05□□□□□ -1.28
MCF2-205ENST00000437564 SYNMO15061 1565 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SYNJ1O43426 1573 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 TTC21BQ7Z4L5 1316 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 LRRC72A6NJI9 287 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 HIP1O00291 1037 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 IFRD1O00458 451 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 EXTL3O43909 919 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ORC4O43929 436 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 GADD45BO75293 160 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 ZSCAN22P10073 491 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 PCNAP12004 261 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 TMOD1P28289 359 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 NR2C2P49116 596 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 AP3M2P53677 418 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 MCL1Q07820 350 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SLFN5Q08AF3 891 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 TCIRG1Q13488 830 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 HLTFQ14527 1009 aaKnown RBP eCLIP7.04□□□□□ -1.28
MCF2-205ENST00000437564 TRAPPC3LQ5T215 181 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 KCTD16Q68DU8 428 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SDE2Q6IQ49 451 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SH3BP5LQ7L8J4 393 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 DDX42Q86XP3 938 aaKnown RBP eCLIP7.04□□□□□ -1.28
MCF2-205ENST00000437564 HACE1Q8IYU2 909 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CADM3Q8N126 398 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 OSCP1Q8WVF1 389 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ABTB1Q969K4 478 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 CEP19Q96LK0 163 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ERP44Q9BS26 406 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 NIFKQ9BYG3 293 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 AGXT2Q9BYV1 514 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SHCBP1LQ9BZQ2 653 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 NDST4Q9H3R1 872 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 UBN1Q9NPG3 1134 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 PIH1D1Q9NWS0 290 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 PPP1R14DQ9NXH3 145 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ARHGEF38Q9NXL2 777 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 DDX56Q9NY93 547 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 EMC3Q9P0I2 261 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 TRIM10Q9UDY6 481 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 AGAP1Q9UPQ3 857 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 NFE2L3Q9Y4A8 694 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 PPP2R3BQ9Y5P8 575 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 ADGRG1Q9Y653 693 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 EMILIN1Q9Y6C2 1016 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SHANK2Q9UPX8 1470 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CPSF1Q10570 1443 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 PLEKHG1Q9ULL1 1385 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 IFT140Q96RY7 1462 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CETN3O15182 167 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SEC24DO94855 1032 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 FARP2O94887 1054 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 ASMTLO95671 621 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CHRNB1P11230 501 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CDK4P11802 303 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 NAGAP17050 411 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CFL1P23528 166 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 PSMA4P25789 261 aaKnown RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 HPDP32754 393 aaPredicted RBP7.04□□□□□ -1.28
MCF2-205ENST00000437564 TRAPPC10P48553 1259 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 UBXN1Q04323 297 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 KLHL30Q0D2K2 578 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 RASGRF1Q13972 1273 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 SEMA3AQ14563 771 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 EPHA7Q15375 998 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 DIXDC1Q155Q3 683 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CFAP70Q5T0N1 1121 aa7.04□□□□□ -1.28
MCF2-205ENST00000437564 CCDC102BQ68D86 513 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms