RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 AEBP2Q6ZN18 517 aaPredicted RBP15.68■□□□□ 0.1
MCF2-205ENST00000437564 CHIC1Q5VXU3 224 aa14.78□□□□□ -0.04
MCF2-205ENST00000437564 SENP3Q9H4L4 574 aaPredicted RBP13.62□□□□□ -0.23
MCF2-205ENST00000437564 PHF23Q9BUL5 403 aaPredicted RBP13.28□□□□□ -0.28
MCF2-205ENST00000437564 POTEDQ86YR6 584 aa13□□□□□ -0.33
MCF2-205ENST00000437564 FOXD1Q16676 465 aa12.69□□□□□ -0.38
MCF2-205ENST00000437564 MSH5O43196 834 aa12.25□□□□□ -0.45
MCF2-205ENST00000437564 MYT1Q01538 1121 aa12.14□□□□□ -0.47
MCF2-205ENST00000437564 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
MCF2-205ENST00000437564 PLPPR3Q6T4P5 718 aa11.83□□□□□ -0.52
MCF2-205ENST00000437564 TTBK1Q5TCY1 1321 aaPredicted RBP11.81□□□□□ -0.52
MCF2-205ENST00000437564 PIAS4Q8N2W9 510 aaPredicted RBP11.69□□□□□ -0.54
MCF2-205ENST00000437564 SLC24A1O60721 1099 aa11.43□□□□□ -0.58
MCF2-205ENST00000437564 PPP6R1Q9UPN7 881 aa11.28□□□□□ -0.6
MCF2-205ENST00000437564 ERICH6Q7L0X2 663 aa11.23□□□□□ -0.61
MCF2-205ENST00000437564 ADRA2BP18089 450 aa11.21□□□□□ -0.61
MCF2-205ENST00000437564 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.62
MCF2-205ENST00000437564 KCNA4P22459 653 aa11.13□□□□□ -0.63
MCF2-205ENST00000437564 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
MCF2-205ENST00000437564 APLP2Q06481 763 aa11.12□□□□□ -0.63
MCF2-205ENST00000437564 DAXXQ9UER7 740 aaPredicted RBP10.91□□□□□ -0.66
MCF2-205ENST00000437564 CACNB1Q02641 598 aaPredicted RBP10.85□□□□□ -0.67
MCF2-205ENST00000437564 CSRNP3Q8WYN3 585 aa10.79□□□□□ -0.68
MCF2-205ENST00000437564 BCL11AQ9H165 835 aa10.68□□□□□ -0.7
MCF2-205ENST00000437564 DMRT2Q9Y5R5 561 aa10.68□□□□□ -0.7
MCF2-205ENST00000437564 SLC4A1APQ9BWU0 796 aaKnown RBP10.68□□□□□ -0.7
MCF2-205ENST00000437564 HRCP23327 699 aa10.61□□□□□ -0.71
MCF2-205ENST00000437564 PPP4R3CPQ6ZMV5 832 aa10.54□□□□□ -0.72
MCF2-205ENST00000437564 MAPK8IP2Q13387 824 aaPredicted RBP10.48□□□□□ -0.73
MCF2-205ENST00000437564 FAM9AQ8IZU1 332 aaPredicted RBP10.46□□□□□ -0.73
MCF2-205ENST00000437564 SCAF1Q9H7N4 1312 aaKnown RBP10.45□□□□□ -0.74
MCF2-205ENST00000437564 EIF5BO60841 1220 aaKnown RBP10.43□□□□□ -0.74
MCF2-205ENST00000437564 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
MCF2-205ENST00000437564 CENPBP07199 599 aaPredicted RBP10.39□□□□□ -0.75
MCF2-205ENST00000437564 NPM3O75607 178 aaKnown RBP10.34□□□□□ -0.75
MCF2-205ENST00000437564 RNF39Q9H2S5 420 aa10.33□□□□□ -0.76
MCF2-205ENST00000437564 ZBTB22O15209 634 aa10.3□□□□□ -0.76
MCF2-205ENST00000437564 C1QBPQ07021 282 aaKnown RBP10.2□□□□□ -0.78
MCF2-205ENST00000437564 DCAF8L1A6NGE4 600 aa10.18□□□□□ -0.78
MCF2-205ENST00000437564 UBE2Q2Q8WVN8 375 aa10.12□□□□□ -0.79
MCF2-205ENST00000437564 ANP32EQ9BTT0 268 aa10.1□□□□□ -0.79
MCF2-205ENST00000437564 RTN4Q9NQC3 1192 aaKnown RBP10.08□□□□□ -0.8
MCF2-205ENST00000437564 CNKSR2Q8WXI2 1034 aa10.07□□□□□ -0.8
MCF2-205ENST00000437564 POTEHQ6S545 545 aa10.06□□□□□ -0.8
MCF2-205ENST00000437564 ARXQ96QS3 562 aa10.05□□□□□ -0.8
MCF2-205ENST00000437564 HOXD11P31277 338 aaPredicted RBP10.03□□□□□ -0.8
MCF2-205ENST00000437564 RANGAP1P46060 587 aaPredicted RBP10.03□□□□□ -0.8
MCF2-205ENST00000437564 ACIN1Q9UKV3 1341 aaKnown RBP10.03□□□□□ -0.8
MCF2-205ENST00000437564 AMER1Q5JTC6 1135 aaPredicted RBP10□□□□□ -0.81
MCF2-205ENST00000437564 FOXD4L1Q9NU39 408 aa9.99□□□□□ -0.81
MCF2-205ENST00000437564 PPARGC1BQ86YN6 1023 aaKnown RBP9.96□□□□□ -0.81
MCF2-205ENST00000437564 PLEKHG5O94827 1062 aa9.94□□□□□ -0.82
MCF2-205ENST00000437564 PODXL2Q9NZ53 605 aa9.94□□□□□ -0.82
MCF2-205ENST00000437564 DNAJC5BQ9UF47 199 aa9.94□□□□□ -0.82
MCF2-205ENST00000437564 ZEB1P37275 1124 aaPredicted RBP9.91□□□□□ -0.82
MCF2-205ENST00000437564 GTF3C3Q9Y5Q9 886 aa9.88□□□□□ -0.83
MCF2-205ENST00000437564 PKNOX2Q96KN3 472 aa9.82□□□□□ -0.84
MCF2-205ENST00000437564 NEUROD1Q13562 356 aa9.79□□□□□ -0.84
MCF2-205ENST00000437564 ANO8Q9HCE9 1232 aaPredicted RBP9.78□□□□□ -0.84
MCF2-205ENST00000437564 RNF216Q9NWF9 866 aaPredicted RBP9.78□□□□□ -0.84
MCF2-205ENST00000437564 ERICH6BQ5W0A0 696 aa9.77□□□□□ -0.84
MCF2-205ENST00000437564 NEFLP07196 543 aa9.75□□□□□ -0.85
MCF2-205ENST00000437564 MYT1LQ9UL68 1186 aa9.75□□□□□ -0.85
MCF2-205ENST00000437564 KLHL34Q8N239 644 aa9.7□□□□□ -0.86
MCF2-205ENST00000437564 PDIA4P13667 645 aaKnown RBP9.66□□□□□ -0.86
MCF2-205ENST00000437564 FKBP8Q14318 412 aa9.66□□□□□ -0.86
MCF2-205ENST00000437564 HOMEZQ8IX15 550 aa9.66□□□□□ -0.86
MCF2-205ENST00000437564 PCGF6Q9BYE7 350 aa9.66□□□□□ -0.86
MCF2-205ENST00000437564 TIMELESSQ9UNS1 1208 aa9.64□□□□□ -0.87
MCF2-205ENST00000437564 SLC4A2P04920 1241 aa9.62□□□□□ -0.87
MCF2-205ENST00000437564 CLSPNQ9HAW4 1339 aa9.61□□□□□ -0.87
MCF2-205ENST00000437564 PDE4CQ08493 712 aa9.61□□□□□ -0.87
MCF2-205ENST00000437564 ATXN8OSP0DMR3 200 aa9.57□□□□□ -0.88
MCF2-205ENST00000437564 SALL2Q9Y467 1007 aaPredicted RBP9.53□□□□□ -0.88
MCF2-205ENST00000437564 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.52□□□□□ -0.89
MCF2-205ENST00000437564 TAF7LQ5H9L4 462 aa9.5□□□□□ -0.89
MCF2-205ENST00000437564 FGD1P98174 961 aa9.49□□□□□ -0.89
MCF2-205ENST00000437564 GLIPR1L2Q4G1C9 344 aa9.49□□□□□ -0.89
MCF2-205ENST00000437564 MYCNP04198 464 aaPredicted RBP9.48□□□□□ -0.89
MCF2-205ENST00000437564 TULP1O00294 542 aaPredicted RBP9.46□□□□□ -0.89
MCF2-205ENST00000437564 TSHZ2Q9NRE2 1034 aa9.45□□□□□ -0.9
MCF2-205ENST00000437564 CCDC180Q9P1Z9 1646 aa9.45□□□□□ -0.9
MCF2-205ENST00000437564 DSG3P32926 999 aa9.42□□□□□ -0.9
MCF2-205ENST00000437564 DCAF1Q9Y4B6 1507 aa9.4□□□□□ -0.9
MCF2-205ENST00000437564 CCDC136Q96JN2 1154 aa9.39□□□□□ -0.91
MCF2-205ENST00000437564 NPM2Q86SE8 214 aaKnown RBP9.37□□□□□ -0.91
MCF2-205ENST00000437564 ZNF326Q5BKZ1 582 aaKnown RBP9.35□□□□□ -0.91
MCF2-205ENST00000437564 TRIM26Q12899 539 aaPredicted RBP9.34□□□□□ -0.91
MCF2-205ENST00000437564 AAMPQ13685 434 aa9.34□□□□□ -0.91
MCF2-205ENST00000437564 BCL11BQ9C0K0 894 aaPredicted RBP9.34□□□□□ -0.91
MCF2-205ENST00000437564 BRD2P25440 801 aaKnown RBP9.33□□□□□ -0.92
MCF2-205ENST00000437564 DEKP35659 375 aaKnown RBP9.32□□□□□ -0.92
MCF2-205ENST00000437564 CAPN15O75808 1086 aa9.3□□□□□ -0.92
MCF2-205ENST00000437564 RSPH6AQ9H0K4 717 aa9.3□□□□□ -0.92
MCF2-205ENST00000437564 ZMYND15Q9H091 742 aa9.28□□□□□ -0.92
MCF2-205ENST00000437564 FBXO3Q9UK99 471 aa9.28□□□□□ -0.92
MCF2-205ENST00000437564 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
MCF2-205ENST00000437564 DCAF8L2P0C7V8 631 aa9.26□□□□□ -0.93
MCF2-205ENST00000437564 MYO15BQ96JP2 1530 aa9.26□□□□□ -0.93
MCF2-205ENST00000437564 RSPH4AQ5TD94 716 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms