RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ZFP91Q96JP5 570 aaPredicted RBP17.02■□□□□ 0.32
UPF3B-202ENST00000345865 GANQ9H2C0 597 aa17.02■□□□□ 0.32
UPF3B-202ENST00000345865 PDE11AQ9HCR9 933 aa17.02■□□□□ 0.32
UPF3B-202ENST00000345865 TMX2Q9Y320 296 aa17.02■□□□□ 0.32
UPF3B-202ENST00000345865 TNS1Q9HBL0 1735 aaKnown RBP17.02■□□□□ 0.32
UPF3B-202ENST00000345865 CNTNAP1P78357 1384 aa17.02■□□□□ 0.32
UPF3B-202ENST00000345865 UTRNP46939 3433 aa17.02■□□□□ 0.32
UPF3B-202ENST00000345865 COL4A5P29400 1685 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 RBAK-RBAKDNI3L0D1 243 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 ZBTB39O15060 712 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 CETN3O15182 167 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 TACC1O75410 805 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 ZNF76P36508 570 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 UBXN2AP68543 259 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 SFMBT2Q5VUG0 894 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 CCDC174Q6PII3 467 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.31
UPF3B-202ENST00000345865 ZNF70Q9UC06 446 aaPredicted RBP17.02■□□□□ 0.31
UPF3B-202ENST00000345865 ZBTB12Q9Y330 459 aaPredicted RBP17.02■□□□□ 0.31
UPF3B-202ENST00000345865 SFI1A8K8P3 1242 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 N4BP1O75113 896 aaKnown RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 ZMYND10O75800 440 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 ACTN1P12814 892 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 C2orf54Q08AI8 447 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 CTTNQ14247 550 aaKnown RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 CASP8Q14790 479 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 ARHGAP27Q6ZUM4 889 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 OTOP1Q7RTM1 612 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 PIGOQ8TEQ8 1089 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 SYN2Q92777 582 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 GMLQ99445 158 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 HSD17B14Q9BPX1 270 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 POLR3CQ9BUI4 534 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 PDGFDQ9GZP0 370 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 IKZF4Q9H2S9 585 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 FAM184BQ9ULE4 1060 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 LRRIQ3A6PVS8 624 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 NCK2O43639 380 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 SERPING1P05155 500 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 CKAP4Q07065 602 aaKnown RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 SLC9C1Q4G0N8 1177 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 NFRKBQ6P4R8 1299 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 RSBN1LQ6PCB5 846 aaPredicted RBP17.01■□□□□ 0.31
UPF3B-202ENST00000345865 PSMB7Q99436 277 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 ZBTB21Q9ULJ3 1066 aa17.01■□□□□ 0.31
UPF3B-202ENST00000345865 BUB1O43683 1085 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 AKAP3O75969 853 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 SLITRK3O94933 977 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 EYA4O95677 639 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 SLC9A1P19634 815 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 CXCR5P32302 372 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 ARID5AQ03989 594 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 ZYXQ15942 572 aaKnown RBP17■□□□□ 0.31
UPF3B-202ENST00000345865 SLC15A2Q16348 729 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 RINT1Q6NUQ1 792 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 CAGE1Q8TC20 777 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 FAM151AQ8WW52 585 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 GLIS2Q9BZE0 524 aaPredicted RBP17■□□□□ 0.31
UPF3B-202ENST00000345865 ARHGEF10LQ9HCE6 1279 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 SMARCAL1Q9NZC9 954 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 HDAC9Q9UKV0 1011 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 SYNPO2Q9UMS6 1093 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 RABGAP1Q9Y3P9 1069 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 RBBP6Q7Z6E9 1792 aaKnown RBP17■□□□□ 0.31
UPF3B-202ENST00000345865 ASTN1O14525 1302 aa17■□□□□ 0.31
UPF3B-202ENST00000345865 PSMD10O75832 226 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 TUBBP07437 444 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 CYP2C19P33261 490 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 CASP4P49662 377 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 FAM133AQ8N9E0 248 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 SUPT20HQ8NEM7 779 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 RPGRIP1Q96KN7 1286 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 EHD2Q9NZN4 543 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.99■□□□□ 0.31
UPF3B-202ENST00000345865 PDXKO00764 312 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 CHMP2AO43633 222 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 MYBL2P10244 700 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 RAPGEF1Q13905 1077 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 ENOX2Q16206 610 aaKnown RBP16.99■□□□□ 0.31
UPF3B-202ENST00000345865 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 DYDC2Q96IM9 177 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 OSBPL9Q96SU4 736 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 HINFPQ9BQA5 517 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 TLR10Q9BXR5 811 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 TMEM39BQ9GZU3 492 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 NUCKS1Q9H1E3 243 aaKnown RBP16.99■□□□□ 0.31
UPF3B-202ENST00000345865 FBXO28Q9NVF7 368 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 AIPL1Q9NZN9 384 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 TMOD2Q9NZR1 351 aa16.99■□□□□ 0.31
UPF3B-202ENST00000345865 A0A087X0T9 212 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 VIL1P09327 827 aaKnown RBP16.98■□□□□ 0.31
UPF3B-202ENST00000345865 FAM228BP0C875 321 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 PRLRP16471 622 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 FAM193AP78312 1265 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 EZH2Q15910 746 aaKnown RBP16.98■□□□□ 0.31
UPF3B-202ENST00000345865 BMT2Q1RMZ1 405 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 KLHDC7AQ5VTJ3 777 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 FRMD5Q7Z6J6 570 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 TPH2Q8IWU9 490 aa16.98■□□□□ 0.31
UPF3B-202ENST00000345865 MSL3Q8N5Y2 521 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms