RNA–Protein interactions for RNA: snR49

snR49, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR49, Length 165 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR49	snR49	VMA13	P41807	478 aa	Known RBP	0.85	□□□□□ -2.27
snR49	snR49	STB1	P42845	420 aa		0.85	□□□□□ -2.27
snR49	snR49	MFG1	Q07684	458 aa		0.85	□□□□□ -2.27
snR49	snR49	CBF5	P33322	483 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.27	not detected
snR49	snR49	HEL1	P36113	551 aa		0.84	□□□□□ -2.27
snR49	snR49	YHR054C	P38780	354 aa		0.84	□□□□□ -2.27
snR49	snR49	COX14	P39103	70 aa		0.84	□□□□□ -2.27
snR49	snR49	ESL1	P40456	1118 aa		0.84	□□□□□ -2.27
snR49	snR49	YJL144W	P47009	104 aa		0.84	□□□□□ -2.27
snR49	snR49	PHB2	P50085	310 aa		0.84	□□□□□ -2.27
snR49	snR49	HST4	P53688	370 aa		0.84	□□□□□ -2.27
snR49	snR49	SKI8	Q02793	397 aa	Predicted RBP	0.84	□□□□□ -2.27
snR49	snR49	REX4	Q08237	289 aa		0.84	□□□□□ -2.27
snR49	snR49	RPS19A	P07280	144 aa	Known RBP	0.83	□□□□□ -2.28
snR49	snR49	RPS19B	P07281	144 aa	Predicted RBP	0.83	□□□□□ -2.28
snR49	snR49	DFR1	P07807	211 aa	Known RBP RIP-Chip data	0.83	□□□□□ -2.28	not detected
snR49	snR49	SIN4	P32259	974 aa		0.83	□□□□□ -2.28
snR49	snR49	SKN1	P33336	771 aa		0.83	□□□□□ -2.28
snR49	snR49	FHL1	P39521	936 aa		0.83	□□□□□ -2.28
snR49	snR49	YIR035C	P40579	254 aa		0.83	□□□□□ -2.28
snR49	snR49	HAC1	P41546	238 aa		0.83	□□□□□ -2.28
snR49	snR49	AIM24	P47127	394 aa		0.83	□□□□□ -2.28
snR49	snR49	OAZ1	Q02803	292 aa		0.83	□□□□□ -2.28
snR49	snR49	RAX1	Q08760	435 aa		0.83	□□□□□ -2.28
snR49	snR49	YPR096C	O13587	100 aa		0.82	□□□□□ -2.28
snR49	snR49	SEC53	P07283	254 aa	Known RBP	0.82	□□□□□ -2.28
snR49	snR49	CBS1	P14066	229 aa		0.82	□□□□□ -2.28
snR49	snR49	DEP1	P31385	405 aa		0.82	□□□□□ -2.28
snR49	snR49	RRP1	P35178	278 aa	Predicted RBP	0.82	□□□□□ -2.28
snR49	snR49	YGP1	P38616	354 aa	Known RBP	0.82	□□□□□ -2.28
snR49	snR49	YHK8	P38776	514 aa		0.82	□□□□□ -2.28
snR49	snR49	MRX6	P48564	524 aa		0.82	□□□□□ -2.28
snR49	snR49	CLD1	P53264	445 aa		0.82	□□□□□ -2.28
snR49	snR49	YML131W	Q03102	365 aa		0.82	□□□□□ -2.28
snR49	snR49	TDA1	Q03533	586 aa		0.82	□□□□□ -2.28
snR49	snR49	MDM36	Q06820	579 aa		0.82	□□□□□ -2.28
snR49	snR49	RCN2	Q12044	265 aa		0.82	□□□□□ -2.28
snR49	snR49	FOB1	O13329	566 aa		0.81	□□□□□ -2.28
snR49	snR49	RIP1	P08067	215 aa		0.81	□□□□□ -2.28
snR49	snR49	CLN1	P20437	546 aa		0.81	□□□□□ -2.28
snR49	snR49	YCL068C	P25593	260 aa		0.81	□□□□□ -2.28
snR49	snR49	DPH5	P32469	300 aa	Predicted RBP	0.81	□□□□□ -2.28
snR49	snR49	YEF1	P32622	495 aa		0.81	□□□□□ -2.28
snR49	snR49	UTR5	P32630	166 aa		0.81	□□□□□ -2.28
snR49	snR49	AST1	P35183	429 aa		0.81	□□□□□ -2.28
snR49	snR49	CST26	P38226	397 aa		0.81	□□□□□ -2.28
snR49	snR49	RFC3	P38629	340 aa		0.81	□□□□□ -2.28
snR49	snR49	YNL208W	P40159	199 aa	Known RBP	0.81	□□□□□ -2.28
snR49	snR49	DOT5	P40553	215 aa		0.81	□□□□□ -2.28
snR49	snR49	LCB3	P47013	409 aa		0.81	□□□□□ -2.28
snR49	snR49	YJR011C	P47086	261 aa	Predicted RBP	0.81	□□□□□ -2.28
snR49	snR49	VHT1	P53241	593 aa		0.81	□□□□□ -2.28
snR49	snR49	RRP9	Q06506	573 aa	Known RBP	0.81	□□□□□ -2.28
snR49	snR49	SMC5	Q08204	1093 aa		0.81	□□□□□ -2.28
snR49	snR49	SRL2	Q12020	392 aa		0.81	□□□□□ -2.28
snR49	snR49	RIM20	Q12033	661 aa		0.81	□□□□□ -2.28
snR49	snR49	CEX1	Q12453	761 aa		0.81	□□□□□ -2.28
snR49	snR49	SCH9	P11792	824 aa	Known RBP	0.8	□□□□□ -2.28
snR49	snR49	MAM33	P40513	266 aa		0.8	□□□□□ -2.28
snR49	snR49	COQ5	P49017	307 aa		0.8	□□□□□ -2.28
snR49	snR49	TWF1	P53250	332 aa		0.8	□□□□□ -2.28
snR49	snR49	GPI15	P53961	229 aa		0.8	□□□□□ -2.28
snR49	snR49	CCE1	Q03702	353 aa		0.8	□□□□□ -2.28
snR49	snR49	TPT1	Q12272	230 aa	Known RBP	0.8	□□□□□ -2.28
snR49	snR49	GPH1	P06738	902 aa	Known RBP	0.79	□□□□□ -2.28
snR49	snR49	TFB1	P32776	642 aa		0.79	□□□□□ -2.28
snR49	snR49	COX13	P32799	129 aa		0.79	□□□□□ -2.28
snR49	snR49	SEC66	P33754	206 aa		0.79	□□□□□ -2.28
snR49	snR49	SRB2	P34162	210 aa		0.79	□□□□□ -2.28
snR49	snR49	MUD2	P36084	527 aa	Known RBP	0.79	□□□□□ -2.28
snR49	snR49	VHC1	P38329	1120 aa		0.79	□□□□□ -2.28
snR49	snR49	MET28	P40573	187 aa		0.79	□□□□□ -2.28
snR49	snR49	YGR250C	P53316	781 aa	Known RBP	0.79	□□□□□ -2.28
snR49	snR49	MEP3	P53390	489 aa		0.79	□□□□□ -2.28
snR49	snR49	ZRG17	P53735	605 aa		0.79	□□□□□ -2.28
snR49	snR49	RPT6	Q01939	405 aa	Known RBP	0.79	□□□□□ -2.28
snR49	snR49	BEM2	P39960	2167 aa	Known RBP	0.79	□□□□□ -2.28
snR49	snR49	SPS4	P09937	338 aa		0.78	□□□□□ -2.28
snR49	snR49	VTC2	P43585	828 aa		0.78	□□□□□ -2.28
snR49	snR49	FAR10	Q06001	478 aa		0.78	□□□□□ -2.28
snR49	snR49	EAF3	Q12432	401 aa		0.78	□□□□□ -2.28
snR49	snR49	YOL085C	Q99345	113 aa		0.78	□□□□□ -2.28
snR49	snR49	PDC2	P32896	925 aa		0.77	□□□□□ -2.29
snR49	snR49	PMT1	P33775	817 aa		0.77	□□□□□ -2.29
snR49	snR49	YAL037W	P39728	267 aa		0.77	□□□□□ -2.29
snR49	snR49	YEL057C	P39983	233 aa		0.77	□□□□□ -2.29
snR49	snR49	YJR008W	P47085	338 aa		0.77	□□□□□ -2.29
snR49	snR49	YJR030C	P47101	745 aa		0.77	□□□□□ -2.29
snR49	snR49	GIR2	Q03768	265 aa	Predicted RBP	0.77	□□□□□ -2.29
snR49	snR49	YML133C	Q03099	1374 aa		0.77	□□□□□ -2.29
snR49	snR49	YLL067C	Q07888	1374 aa		0.77	□□□□□ -2.29
snR49	snR49	YLL066C	Q99208	1374 aa		0.77	□□□□□ -2.29
snR49	snR49	CMK2	P22517	447 aa		0.76	□□□□□ -2.29
snR49	snR49	CMC1	P36064	111 aa		0.76	□□□□□ -2.29
snR49	snR49	TRR2	P38816	342 aa		0.76	□□□□□ -2.29
snR49	snR49	PEX22	P39718	180 aa		0.76	□□□□□ -2.29
snR49	snR49	SCC4	P40090	624 aa		0.76	□□□□□ -2.29
snR49	snR49	NRM1	P53718	249 aa		0.76	□□□□□ -2.29
snR49	snR49	COS1	P53822	381 aa		0.76	□□□□□ -2.29
snR49	snR49	ATG16	Q03818	150 aa		0.76	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 48.5 ms