RNA–Protein interactions for RNA: YML046W

PRP39, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP39, Length 1,890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP39YML046W ZUO1P32527 433 aaKnown RBP0.61□□□□□ -2.31
PRP39YML046W PTH2P34222 208 aa0.61□□□□□ -2.31
PRP39YML046W YGR018CP53211 109 aa0.61□□□□□ -2.31
PRP39YML046W NUP116Q02630 1113 aa0.61□□□□□ -2.31
PRP39YML046W SLF1Q12034 447 aaKnown RBP0.61□□□□□ -2.31
PRP39YML046W CDC50P25656 391 aa0.6□□□□□ -2.31
PRP39YML046W APE2P32454 952 aaKnown RBP0.6□□□□□ -2.31
PRP39YML046W YBR137WP38276 179 aa0.6□□□□□ -2.31
PRP39YML046W OM14P38325 134 aa0.6□□□□□ -2.31
PRP39YML046W YPT35P38815 214 aaKnown RBP0.6□□□□□ -2.31
PRP39YML046W YIL029CP40538 142 aa0.6□□□□□ -2.31
PRP39YML046W BNA1P47096 177 aa0.6□□□□□ -2.31
PRP39YML046W FRE4P53746 719 aa0.6□□□□□ -2.31
PRP39YML046W UBX4P54730 416 aa0.6□□□□□ -2.31
PRP39YML046W YPL272CQ08984 517 aa0.6□□□□□ -2.31
PRP39YML046W SMF3Q12078 473 aaPredicted RBP0.6□□□□□ -2.31
PRP39YML046W FAS2P19097 1887 aaKnown RBP0.6□□□□□ -2.31
PRP39YML046W BEM2P39960 2167 aaKnown RBP0.59□□□□□ -2.31
PRP39YML046W SIR4P11978 1358 aa0.59□□□□□ -2.31
PRP39YML046W ELO2P25358 347 aa0.59□□□□□ -2.31
PRP39YML046W PFF1P38244 976 aa0.59□□□□□ -2.31
PRP39YML046W PTI1P39927 425 aaPredicted RBP0.59□□□□□ -2.31
PRP39YML046W SAP185P40856 1058 aa0.59□□□□□ -2.31
PRP39YML046W SIP4P46954 829 aa0.59□□□□□ -2.31
PRP39YML046W UPF3P48412 387 aaKnown RBP0.59□□□□□ -2.31
PRP39YML046W YNR048WP53740 393 aa0.59□□□□□ -2.31
PRP39YML046W RHO5P53879 331 aaKnown RBP0.59□□□□□ -2.31
PRP39YML046W ALF1P53904 254 aa0.59□□□□□ -2.31
PRP39YML046W YMR102CQ03177 834 aa0.59□□□□□ -2.31
PRP39YML046W YET2Q04210 160 aa0.59□□□□□ -2.31
PRP39YML046W VPS38Q05919 439 aa0.59□□□□□ -2.31
PRP39YML046W RIF2Q06208 395 aa0.59□□□□□ -2.31
PRP39YML046W SGT1Q08446 395 aa0.59□□□□□ -2.31
PRP39YML046W YPR096CO13587 100 aa0.58□□□□□ -2.32
PRP39YML046W HIS4P00815 799 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W GYP6P32806 458 aa0.58□□□□□ -2.32
PRP39YML046W SKN1P33336 771 aa0.58□□□□□ -2.32
PRP39YML046W AXL2P38928 823 aa0.58□□□□□ -2.32
PRP39YML046W LYS1P38998 373 aaRIP-Chip data0.58□□□□□ -2.32not detected
PRP39YML046W YIR035CP40579 254 aa0.58□□□□□ -2.32
PRP39YML046W GTR1Q00582 310 aa0.58□□□□□ -2.32
PRP39YML046W YSA1Q01976 231 aa0.58□□□□□ -2.32
PRP39YML046W FIN1Q03898 291 aa0.58□□□□□ -2.32
PRP39YML046W YDR387CQ04162 555 aa0.58□□□□□ -2.32
PRP39YML046W REX4Q08237 289 aa0.58□□□□□ -2.32
PRP39YML046W SPE4Q12455 300 aa0.58□□□□□ -2.32
PRP39YML046W GEA1P47102 1408 aaPredicted RBP0.58□□□□□ -2.32
PRP39YML046W FUM1P08417 488 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W MSI1P13712 422 aa0.58□□□□□ -2.32
PRP39YML046W RPB5P20434 215 aa0.58□□□□□ -2.32
PRP39YML046W ECM25P32525 599 aa0.58□□□□□ -2.32
PRP39YML046W TCD2P36101 447 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W WSS1P38838 269 aa0.58□□□□□ -2.32
PRP39YML046W BAT1P38891 393 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W FRT2P39734 528 aa0.58□□□□□ -2.32
PRP39YML046W RMD9P53140 646 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W HOT1Q03213 719 aa0.58□□□□□ -2.32
PRP39YML046W BET5Q03630 159 aa0.58□□□□□ -2.32
PRP39YML046W RRP5Q05022 1729 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W ECM7Q06200 448 aa0.58□□□□□ -2.32
PRP39YML046W CMS1Q07897 291 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W HUA2Q12134 243 aa0.58□□□□□ -2.32
PRP39YML046W RLM1Q12224 676 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-HO13535 1793 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-DR5P0C2I2 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-DR6P0C2I3 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-LR2P0C2I5 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-LR3P0C2I6 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W TY1B-PR1P0C2I9 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W TY1B-PR2P0C2J0 1756 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-PR3P0C2J1 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W TY1B-JR1P47098 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-ML2Q03434 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W TY1B-ER1Q03612 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-ML1Q04711 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W TY1B-GR2Q12269 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-OLQ12273 1755 aa0.58□□□□□ -2.32
PRP39YML046W TY1B-PLQ12414 1755 aaKnown RBP0.58□□□□□ -2.32
PRP39YML046W YRF1-4O13559 1382 aa0.57□□□□□ -2.32
PRP39YML046W APC1P53886 1748 aa0.57□□□□□ -2.32
PRP39YML046W RPL31BP0C2H9 113 aaKnown RBP0.57□□□□□ -2.32
PRP39YML046W CLN1P20437 546 aa0.57□□□□□ -2.32
PRP39YML046W ITR1P30605 584 aa0.57□□□□□ -2.32
PRP39YML046W STP2P38704 541 aa0.57□□□□□ -2.32
PRP39YML046W DOT5P40553 215 aa0.57□□□□□ -2.32
PRP39YML046W AZR1P50080 613 aa0.57□□□□□ -2.32
PRP39YML046W YGR021WP53212 290 aa0.57□□□□□ -2.32
PRP39YML046W YIF1P53845 314 aaKnown RBP0.57□□□□□ -2.32
PRP39YML046W GYL1Q04322 720 aa0.57□□□□□ -2.32
PRP39YML046W YEH1Q07804 573 aa0.57□□□□□ -2.32
PRP39YML046W NOP58Q12499 511 aaKnown RBP0.57□□□□□ -2.32
PRP39YML046W YBR126W-AQ8TGU7 68 aa0.57□□□□□ -2.32
PRP39YML046W ROM2P51862 1356 aaKnown RBP0.57□□□□□ -2.32
PRP39YML046W TY2B-LR1P0C2J3 1770 aa0.57□□□□□ -2.32
PRP39YML046W TY2B-FP0CX63 1770 aa0.57□□□□□ -2.32
PRP39YML046W TY2B-GR2P0CX64 1770 aa0.57□□□□□ -2.32
PRP39YML046W TY2B-CP25384 1770 aa0.57□□□□□ -2.32
PRP39YML046W TY2B-DR2Q03494 1770 aa0.57□□□□□ -2.32
PRP39YML046W TY1B-DR1Q03855 1755 aa0.57□□□□□ -2.32
PRP39YML046W TY2B-DR3Q07791 1770 aaKnown RBP0.57□□□□□ -2.32
Retrieved 100 of 5,963 RNA–protein pairs in 18 ms