RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MTMR8Q96EF0 704 aa8.87□□□□□ -0.99
NEK3-201ENST00000550331 AMNQ9BXJ7 453 aa8.87□□□□□ -0.99
NEK3-201ENST00000550331 C11orf16Q9NQ32 467 aa8.87□□□□□ -0.99
NEK3-201ENST00000550331 PXMP2Q9NR77 195 aa8.87□□□□□ -0.99
NEK3-201ENST00000550331 MAP3K20Q9NYL2 800 aaKnown RBP8.87□□□□□ -0.99
NEK3-201ENST00000550331 DDX41Q9UJV9 622 aaKnown RBP8.87□□□□□ -0.99
NEK3-201ENST00000550331 LAMA4Q16363 1823 aa8.87□□□□□ -0.99
NEK3-201ENST00000550331 CA3P07451 260 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 POU3F3P20264 500 aaPredicted RBP8.86□□□□□ -0.99
NEK3-201ENST00000550331 RBL2Q08999 1139 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 TRAF1Q13077 416 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 LAMC2Q13753 1193 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 SEC23AQ15436 765 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 PTGISQ16647 500 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 DGKDQ16760 1214 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 ARHGEF16Q5VV41 709 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 KRT40Q6A162 431 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 HERC6Q8IVU3 1022 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 PPTC7Q8NI37 304 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 KAT2BQ92831 832 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 HLA-CQ95604 372 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 CTAGE1Q96RT6 745 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 KATNAL1Q9BW62 490 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 FTOQ9C0B1 505 aaKnown RBP eCLIP8.86□□□□□ -0.99
NEK3-201ENST00000550331 CDHR5Q9HBB8 845 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 GTF2IRD1Q9UHL9 959 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 MRVI1Q9Y6F6 885 aa8.86□□□□□ -0.99
NEK3-201ENST00000550331 PALM3A6NDB9 673 aaPredicted RBP8.85□□□□□ -0.99
NEK3-201ENST00000550331 EPOPA6NHQ4 379 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 KIF28PB7ZC32 967 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 KLRF2D3W0D1 207 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 OPLAHO14841 1288 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 ZBTB5O15062 677 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 F2P00734 622 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 CFBP00751 764 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 NR3C2P08235 984 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 HOXD8P13378 290 aaPredicted RBP8.85□□□□□ -0.99
NEK3-201ENST00000550331 SELPP16109 830 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 EIF2AK2P19525 551 aaKnown RBP8.85□□□□□ -0.99
NEK3-201ENST00000550331 CHMP4BP1P59074 171 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 TRDNQ13061 729 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 GDF6Q6KF10 455 aaPredicted RBP8.85□□□□□ -0.99
NEK3-201ENST00000550331 KCNV1Q6PIU1 500 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 STOX1Q6ZVD7 989 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 LRRC8DQ7L1W4 858 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 CHST3Q7LGC8 479 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 STAG2Q8N3U4 1231 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 C7orf31Q8N865 590 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 EXOC6Q8TAG9 804 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 PPP1R13LQ8WUF5 828 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 ARNTL2Q8WYA1 636 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 PDCD2LQ9BRP1 358 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 IL25Q9H293 177 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 VAT1LQ9HCJ6 419 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 PTPRSQ13332 1948 aa8.85□□□□□ -0.99
NEK3-201ENST00000550331 TET1Q8NFU7 2136 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 PI4K2BG5E9Z4 385 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 HAS3O00219 553 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 PPP1R11O60927 126 aaPredicted RBP8.84□□□□□ -0.99
NEK3-201ENST00000550331 CXCL10P02778 98 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 KCNJ6P48051 423 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 MRE11P49959 708 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 WDR5P61964 334 aaKnown RBP8.84□□□□□ -0.99
NEK3-201ENST00000550331 TAP1Q03518 808 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 PTK7Q13308 1070 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 GRM4Q14833 912 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 GPNMBQ14956 572 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 CNKSR3Q6P9H4 555 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 PADI6Q6TGC4 694 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 CYB5R4Q7L1T6 521 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 DHX37Q8IY37 1157 aaKnown RBP8.84□□□□□ -0.99
NEK3-201ENST00000550331 RUFY2Q8WXA3 655 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 DHX38Q92620 1227 aaKnown RBP8.84□□□□□ -0.99
NEK3-201ENST00000550331 TANC1Q9C0D5 1861 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 CD320Q9NPF0 282 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 MAD2L2Q9UI95 211 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 PCDHA1Q9Y5I3 950 aa8.84□□□□□ -0.99
NEK3-201ENST00000550331 TRIP12Q14669 1992 aaPredicted RBP8.84□□□□□ -0.99
NEK3-201ENST00000550331 SCN10AQ9Y5Y9 1956 aa8.83□□□□□ -1
NEK3-201ENST00000550331 ABHD14A-ACY1A0A1B0GW23 586 aa8.83□□□□□ -1
NEK3-201ENST00000550331 ERICH2A1L162 156 aa8.83□□□□□ -1
NEK3-201ENST00000550331 EFCAB14O75071 495 aa8.83□□□□□ -1
NEK3-201ENST00000550331 PPFIA4O75335 1185 aa8.83□□□□□ -1
NEK3-201ENST00000550331 ZNF286BP0CG31 522 aa8.83□□□□□ -1
NEK3-201ENST00000550331 TGFB3P10600 412 aa8.83□□□□□ -1
NEK3-201ENST00000550331 CKBP12277 381 aa8.83□□□□□ -1
NEK3-201ENST00000550331 GSPT1P15170 499 aaKnown RBP8.83□□□□□ -1
NEK3-201ENST00000550331 CCND2P30279 289 aa8.83□□□□□ -1
NEK3-201ENST00000550331 GSK3AP49840 483 aa8.83□□□□□ -1
NEK3-201ENST00000550331 GRB10Q13322 594 aa8.83□□□□□ -1
NEK3-201ENST00000550331 SART3Q15020 963 aaKnown RBP8.83□□□□□ -1
NEK3-201ENST00000550331 PGM5Q15124 567 aa8.83□□□□□ -1
NEK3-201ENST00000550331 KIAA0753Q2KHM9 967 aa8.83□□□□□ -1
NEK3-201ENST00000550331 CELF3Q5SZQ8 465 aaKnown RBP8.83□□□□□ -1
NEK3-201ENST00000550331 TTC22Q5TAA0 569 aa8.83□□□□□ -1
NEK3-201ENST00000550331 MYSM1Q5VVJ2 828 aa8.83□□□□□ -1
NEK3-201ENST00000550331 VSIG10LQ86VR7 867 aa8.83□□□□□ -1
NEK3-201ENST00000550331 HOMER1Q86YM7 354 aa8.83□□□□□ -1
NEK3-201ENST00000550331 UIMC1Q96RL1 719 aa8.83□□□□□ -1
NEK3-201ENST00000550331 RIOX1Q9H6W3 641 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms