RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 ME1P48163 572 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 KCNV1Q6PIU1 500 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 RASGRP2Q7LDG7 609 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 PPM1EQ8WY54 764 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 CCDC34Q96HJ3 373 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 SUGCTQ9HAC7 445 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 TCP11L1Q9NUJ3 509 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 MYH8P13535 1937 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 PHLPP2Q6ZVD8 1323 aa8.25□□□□□ -1.09
CDC42BPA-208ENST00000442054 GAS7O60861 476 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 ACTN1P12814 892 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 XRCC5P13010 732 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 SCG2P13521 617 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 NFX1Q12986 1120 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 TRIM32Q13049 653 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 GRM4Q14833 912 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 SEC23AQ15436 765 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 FSCN1Q16658 493 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 DNTTIP2Q5QJE6 756 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 MICALL1Q8N3F8 863 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 IFNKQ9P0W0 207 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 RIPK3Q9Y572 518 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 A0A087X0B3 334 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 POTEFA5A3E0 1075 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 FANCCQ00597 558 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 MAP3K10Q02779 954 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 IRF5Q13568 498 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 MORC3Q14149 939 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 CCDC73Q6ZRK6 1079 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 DEFB128Q7Z7B8 93 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 MTA3Q9BTC8 594 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 KATNAL1Q9BW62 490 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 JMJD4Q9H9V9 463 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 CGNQ9P2M7 1197 aaKnown RBP8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 WNT7AO00755 349 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 DNM2P50570 870 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 FAM160B1Q5W0V3 765 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 MCTP2Q6DN12 878 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 IQSEC1Q6DN90 963 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 ABRAQ8N0Z2 381 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 NPLOC4Q8TAT6 608 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 SYNPO2Q9UMS6 1093 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 TRIOBPQ9H2D6 2365 aa8.24□□□□□ -1.09
CDC42BPA-208ENST00000442054 EIF3JO75822 258 aaKnown RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 IFNAR1P17181 557 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 TMOD1P28289 359 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 TXLNAP40222 546 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 RCAN1P53805 252 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PNOCQ13519 176 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 MTMR1Q13613 665 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 DHX8Q14562 1220 aaKnown RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 NONOQ15233 471 aaKnown RBP eCLIP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PKN1Q16512 942 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 DGKDQ16760 1214 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 NOM1Q5C9Z4 860 aaKnown RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 MUM1L1Q5H9M0 696 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 CHRDL2Q6WN34 429 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 KRBA2Q6ZNG9 492 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 TC2NQ8N9U0 490 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 ZNF579Q8NAF0 562 aaKnown RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 CCDC150Q8NCX0 1101 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 CLIC6Q96NY7 704 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 VTA1Q9NP79 307 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 SCN9AQ15858 1988 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 COBLO75128 1261 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 MMP1P03956 469 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 LRFN2Q9ULH4 789 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 DKC1O60832 514 aaKnown RBP eCLIP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 CTSHP09668 335 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PRR29P0C7W0 189 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 LAMC2Q13753 1193 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 TPD52L1Q16890 204 aaPredicted RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PDXDC2PQ6P474 469 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 RSRC2Q7L4I2 434 aaKnown RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 GIMAP8Q8ND71 665 aaPredicted RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 ZNF397Q8NF99 534 aaPredicted RBP8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 ERMNQ8TAM6 284 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 AFG1LQ8WV93 481 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PCDHA6Q9UN73 950 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PCDHA8Q9Y5H6 950 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 LTBP1Q14766 1721 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 ATAD5Q96QE3 1844 aa8.23□□□□□ -1.09
CDC42BPA-208ENST00000442054 PAPPA2Q9BXP8 1791 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 TADA3O75528 432 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 IGFBP4P22692 258 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 ALDH5A1P51649 535 aaPredicted RBP8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CCL23P55773 120 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 TLE2Q04725 743 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 BFSP2Q13515 415 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CUL4BQ13620 913 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 PTPN14Q15678 1187 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CYFIP1Q7L576 1253 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 TMEM199Q8N511 208 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CCDC112Q8NEF3 446 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 ZNF577Q9BSK1 485 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CYP39A1Q9NYL5 469 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CUTAO60888 179 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 CABYRO75952 493 aa8.22□□□□□ -1.09
CDC42BPA-208ENST00000442054 KIF20AO95235 890 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms