RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	UTP20	P35194	2493 aa	Known RBP	5.82	□□□□□ -1.48
RPN11	YFR004W	HXK2	P04807	486 aa	Known RBP	5.81	□□□□□ -1.48
RPN11	YFR004W	DST1	P07273	309 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	FBA1	P14540	359 aa	Known RBP	5.81	□□□□□ -1.48
RPN11	YFR004W	MNE1	P24720	663 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	CWP1	P28319	239 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	NTG1	P31378	399 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	SPC34	P36131	295 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	YBR071W	P38243	211 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	YBR285W	P38354	144 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	YHR218W	P38899	603 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	IES5	P40060	125 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	RIC1	P40395	1056 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	GPP1	P41277	250 aa	Known RBP	5.81	□□□□□ -1.48
RPN11	YFR004W	MEP2	P41948	499 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	MTR3	P48240	250 aa	Predicted RBP	5.81	□□□□□ -1.48
RPN11	YFR004W	SHE4	P51534	789 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	COG1	P53079	417 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	SHY1	P53266	389 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	IPI3	P53877	555 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	VAC7	P53950	1165 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	PEX12	Q04370	399 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	SSL1	Q04673	461 aa	Predicted RBP	5.81	□□□□□ -1.48
RPN11	YFR004W	MCP2	Q06567	569 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	GPI11	Q06636	219 aa		5.81	□□□□□ -1.48
RPN11	YFR004W	TIM9	O74700	87 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	INH1	P01097	85 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	EMC1	P25574	760 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	POL4	P25615	582 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	RPS5	P26783	225 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	PEX3	P28795	441 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	CDC5	P32562	705 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	SSE2	P32590	693 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	RPS1A	P33442	255 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	FRE2	P36033	711 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	ALY1	P36117	915 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	YBR241C	P38142	488 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	YHR045W	P38775	560 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	SSZ1	P38788	538 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	MTW1	P39731	289 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	RGI1	P40043	161 aa	Predicted RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	AVT6	P40074	448 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	AIM20	P40451	204 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	GTS1	P40956	396 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	AGP3	P43548	558 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	PET130	P47065	347 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	GTO1	P48239	356 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	HNT2	P49775	206 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	DSL1	P53847	754 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	YMR099C	Q03161	297 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	RSM10	Q03201	203 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	YMR178W	Q03219	274 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	HAS1	Q03532	505 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	YMR111C	Q04461	462 aa	Predicted RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	YPR114W	Q06107	315 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	MCM21	Q06675	368 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	HBT1	Q07653	1046 aa	Known RBP	5.8	□□□□□ -1.48
RPN11	YFR004W	VIK1	Q12045	647 aa		5.8	□□□□□ -1.48
RPN11	YFR004W	RAS2	P01120	322 aa	Known RBP	5.79	□□□□□ -1.48
RPN11	YFR004W	CDC21	P06785	304 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	YKR104W	P0CE69	306 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	CBS2	P14905	389 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	CMK2	P22517	447 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	PTP1	P25044	335 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	DMC1	P25453	334 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	DOM34	P33309	386 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	SDH3	P33421	198 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	PHO11	P35842	467 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	MCM7	P38132	845 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	PHO12	P38693	467 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.79	□□□□□ -1.48	not detected
RPN11	YFR004W	PTI1	P39927	425 aa	Predicted RBP	5.79	□□□□□ -1.48
RPN11	YFR004W	THO1	P40040	218 aa	Known RBP	5.79	□□□□□ -1.48
RPN11	YFR004W	ARF3	P40994	183 aa	RIP-Chip data	5.79	□□□□□ -1.48	not detected
RPN11	YFR004W	GCD10	P41814	478 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	NAS6	P50086	228 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	SPR6	Q01684	191 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	YDR239C	Q03780	787 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	PPN1	Q04119	674 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	VTA1	Q06263	330 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	5.79	□□□□□ -1.48	not detected
RPN11	YFR004W	MSH5	Q12175	901 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	IES3	Q12345	250 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	RPN6	Q12377	434 aa		5.79	□□□□□ -1.48
RPN11	YFR004W	PFK27	Q12471	397 aa	Predicted RBP	5.79	□□□□□ -1.48
RPN11	YFR004W	CDC9	P04819	755 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	RAD7	P06779	565 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SPT3	P06844	337 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	RPS4A	P0CX35	261 aa	Known RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	RPS4B	P0CX36	261 aa	Known RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	FAR1	P21268	830 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	CLB2	P24869	491 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	OCA4	P25366	362 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	ARP2	P32381	391 aa	Known RBP	5.78	□□□□□ -1.48
RPN11	YFR004W	THI80	P35202	319 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	LRG1	P35688	1017 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	STB6	P36085	766 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	YHL012W	P38709	493 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	RBG1	P39729	369 aa		5.78	□□□□□ -1.48
RPN11	YFR004W	SIT1	P39980	628 aa		5.78	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms