RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	BNI4	P53858	892 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	RRP45	Q05636	305 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	GPI11	Q06636	219 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	MMT2	Q08970	484 aa		10.2	□□□□□ -0.78
VPS60	YDR486C	LEU9	Q12166	604 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	PNO1	Q99216	274 aa	Known RBP	10.2	□□□□□ -0.78
VPS60	YDR486C	HOP1	P20050	605 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	MGR1	P25573	417 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	PEX3	P28795	441 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	CTS1	P29029	562 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	YIL001W	P40560	513 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	RIM21	P48565	533 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	YNL095C	P53932	642 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	HOT1	Q03213	719 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	APC4	Q04601	652 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	RRN11	Q04712	507 aa		10.19	□□□□□ -0.78
VPS60	YDR486C	HTA1	P04911	132 aa	Known RBP	10.18	□□□□□ -0.78
VPS60	YDR486C	RAD7	P06779	565 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	CMK2	P22517	447 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	SPB1	P25582	841 aa	Predicted RBP	10.18	□□□□□ -0.78
VPS60	YDR486C	OMA1	P36163	345 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	YBR241C	P38142	488 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	CFD1	P40558	293 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	YJR142W	P47173	342 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	DSL1	P53847	754 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	PEX12	Q04370	399 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	YKU80	Q04437	629 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	ARR1	Q06596	294 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	YLR036C	Q07986	203 aa		10.18	□□□□□ -0.78
VPS60	YDR486C	RPP1B	P10622	106 aa	Known RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	GAL3	P13045	520 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	VPS33	P20795	691 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SSH4	P32343	579 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SRB5	P32585	307 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SCO2	P38072	301 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	AIM2	P39721	246 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	RSP5	P39940	809 aa	Known RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	RPL10	P41805	221 aa	Known RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	YNR068C	P53754	272 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	CSL4	P53859	292 aa	Predicted RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	ASI2	P53895	289 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SED5	Q01590	340 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SKI8	Q02793	397 aa	Predicted RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	TEN1	Q07921	160 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	10.17	□□□□□ -0.78	not detected
VPS60	YDR486C	PSY3	Q12318	242 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	SKM1	Q12469	655 aa		10.17	□□□□□ -0.78
VPS60	YDR486C	PFK27	Q12471	397 aa	Predicted RBP	10.17	□□□□□ -0.78
VPS60	YDR486C	COR1	P07256	457 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	NPR1	P22211	790 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	YCL049C	P25577	312 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	NTH1	P32356	751 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	ARP2	P32381	391 aa	Known RBP	10.16	□□□□□ -0.78
VPS60	YDR486C	OAR1	P35731	278 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	RBG1	P39729	369 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	YEL020C	P39994	560 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	RIC1	P40395	1056 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	IBA57	P47158	497 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	ATP22	P50273	684 aa	Predicted RBP	10.16	□□□□□ -0.78
VPS60	YDR486C	RMR1	P53060	241 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	SPR6	Q01684	191 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	RQC1	Q05468	723 aa	Known RBP	10.16	□□□□□ -0.78
VPS60	YDR486C	YLR030W	Q07967	263 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	THP1	Q08231	455 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	WTM1	Q12363	437 aa	Known RBP	10.16	□□□□□ -0.78
VPS60	YDR486C	MHF2	Q3E829	80 aa		10.16	□□□□□ -0.78
VPS60	YDR486C	CBS2	P14905	389 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	TAH1	P25638	111 aa	Predicted RBP	10.15	□□□□□ -0.78
VPS60	YDR486C	DOA1	P36037	715 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	PTC2	P39966	464 aa	Known RBP	10.15	□□□□□ -0.78
VPS60	YDR486C	QDR2	P40474	542 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	PAC10	P48363	199 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	IGO1	P53897	168 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	OAZ1	Q02803	292 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	DIC1	Q06143	298 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	YLR456W	Q06199	204 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	GLO4	Q12320	285 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	MDM12	Q92328	271 aa		10.15	□□□□□ -0.78
VPS60	YDR486C	SLH1	P53327	1967 aa	Known RBP	10.14	□□□□□ -0.79
VPS60	YDR486C	STE6	P12866	1290 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	URA4	P20051	364 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	SLY41	P22215	453 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	CHA1	P25379	360 aa	Known RBP	10.14	□□□□□ -0.79
VPS60	YDR486C	RIB1	P38066	345 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	TSL1	P38427	1098 aa	Known RBP	10.14	□□□□□ -0.79
VPS60	YDR486C	YHR177W	P38867	453 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	SWD1	P39706	426 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	FAU1	P40099	211 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	LYS12	P40495	371 aa	Known RBP	10.14	□□□□□ -0.79
VPS60	YDR486C	VHR1	P40522	640 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	HOC1	P47124	396 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	TOM22	P49334	152 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	MRK1	P50873	501 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	NRM1	P53718	249 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	RHO4	Q00246	291 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	ISR1	Q06098	443 aa	Known RBP	10.14	□□□□□ -0.79
VPS60	YDR486C	GIC2	Q06648	383 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	BSC6	Q08280	497 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	PIN2	Q12057	282 aa		10.14	□□□□□ -0.79
VPS60	YDR486C	SNF4	P12904	322 aa		10.13	□□□□□ -0.79

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms