RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YPR089W	O13585	888 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	GAL4	P04386	881 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	GPH1	P06738	902 aa	Known RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	SSC1	P0CS90	654 aa	Known RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	URA4	P20051	364 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	KRR1	P25586	316 aa	Predicted RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	VPH2	P32341	215 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	RIB7	P33312	244 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	LOS1	P33418	1100 aa	Predicted RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	FLO10	P36170	1169 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	YBR242W	P38331	238 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	EFM2	P38347	419 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	TIF4631	P39935	952 aa	Known RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	OCA1	P50946	238 aa	Predicted RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	RMD9	P53140	646 aa	Known RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	PKP2	P53170	491 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	SOL4	P53315	255 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	RPT4	P53549	437 aa	Known RBP	5.69	□□□□□ -1.5
TRP1	YDR007W	MEH1	Q02205	184 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	ATG17	Q06410	417 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	YLH47	Q06493	454 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	PGC1	Q08959	321 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	OCA6	Q12454	224 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	FRE6	Q12473	712 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	BNI1	P41832	1953 aa		5.69	□□□□□ -1.5
TRP1	YDR007W	CDC8	P00572	216 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	SEN2	P16658	377 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	DBP7	P36120	742 aa	Known RBP	5.68	□□□□□ -1.5
TRP1	YDR007W	MRPL40	P36534	297 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	PHO90	P39535	881 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	YHB1	P39676	399 aa	Known RBP	5.68	□□□□□ -1.5
TRP1	YDR007W	MIC19	P43594	170 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	KEL2	P50090	882 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	BUD32	P53323	261 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	RSC9	Q03124	581 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	CTL1	Q03220	320 aa	Known RBP	5.68	□□□□□ -1.5
TRP1	YDR007W	CAC2	Q04199	468 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	NOP6	Q07623	225 aa	Known RBP	5.68	□□□□□ -1.5
TRP1	YDR007W	UAF30	Q08747	228 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	AEP3	Q12089	606 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	VAM3	Q12241	283 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	HSP42	Q12329	375 aa		5.68	□□□□□ -1.5
TRP1	YDR007W	LSO2	Q3E772	92 aa	Known RBP	5.68	□□□□□ -1.5
TRP1	YDR007W	RPL1A	P0CX43	217 aa	Known RBP	5.67	□□□□□ -1.5
TRP1	YDR007W	RPL1B	P0CX44	217 aa	Known RBP	5.67	□□□□□ -1.5
TRP1	YDR007W	SPO7	P18410	259 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	VPS1	P21576	704 aa	Known RBP	5.67	□□□□□ -1.5
TRP1	YDR007W	SNC1	P31109	117 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	MSN2	P33748	704 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	PCH2	P38126	564 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	DUG2	P38149	878 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	MMS4	P38257	691 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	VHC1	P38329	1120 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	PHB1	P40961	287 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	YPT11	P48559	417 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	DRN1	P53255	507 aa	Known RBP	5.67	□□□□□ -1.5
TRP1	YDR007W	ADA2	Q02336	434 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	SSK1	Q07084	712 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	MED2	Q12124	431 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	SKS1	Q12505	502 aa		5.67	□□□□□ -1.5
TRP1	YDR007W	RAD52	P06778	471 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	YML002W	P0CF17	737 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	MBR1	P23493	339 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	MCM4	P30665	933 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	RME1	P32338	300 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	KEL1	P38853	1164 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	SER3	P40054	469 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	POP1	P41812	875 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	YJL132W	P47014	750 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	YPL014W	Q02606	381 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	YPL107W	Q02873	248 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	YLR177W	Q06251	628 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	CUE5	Q08412	411 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	YLR112W	Q12130	139 aa		5.66	□□□□□ -1.5
TRP1	YDR007W	RIO1	Q12196	484 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	NOT5	Q12514	560 aa	Predicted RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	HTZ1	Q12692	134 aa	Known RBP	5.66	□□□□□ -1.5
TRP1	YDR007W	LPD1	P09624	499 aa	Known RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	NMT1	P14743	455 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	ATP10	P18496	279 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	PHO84	P25297	587 aa	Known RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	YCR016W	P25617	290 aa	Known RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	YKT6	P36015	200 aa	Known RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	FZO1	P38297	855 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	YER130C	P39959	443 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	FCY21	P40039	528 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	YJR154W	P47181	346 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	YNL234W	P53857	426 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	ERG13	P54839	491 aa	Known RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	SSQ1	Q05931	657 aa	Predicted RBP	5.65	□□□□□ -1.5
TRP1	YDR007W	SYO1	Q07395	620 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	TAF10	Q12030	206 aa		5.65	□□□□□ -1.5
TRP1	YDR007W	SSK22	P25390	1331 aa	Predicted RBP	5.65	□□□□□ -1.51
TRP1	YDR007W	RPO41	P13433	1351 aa	Known RBP	5.65	□□□□□ -1.51
TRP1	YDR007W	RSR1	P13856	272 aa		5.64	□□□□□ -1.51
TRP1	YDR007W	PHO13	P19881	312 aa		5.64	□□□□□ -1.51
TRP1	YDR007W	SGV1	P23293	657 aa	Known RBP	5.64	□□□□□ -1.51
TRP1	YDR007W	LAS1	P36146	502 aa	Predicted RBP	5.64	□□□□□ -1.51
TRP1	YDR007W	SCO2	P38072	301 aa		5.64	□□□□□ -1.51
TRP1	YDR007W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	5.64	□□□□□ -1.51	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms