RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KLRF2D3W0D1 207 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 PITPNM1O00562 1244 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 TXNP10599 105 aaKnown RBP14.52□□□□□ -0.09
UPF1-208ENST00000600012 ACTN1P12814 892 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 GNAQP50148 359 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 MRPS5P82675 430 aaKnown RBP14.52□□□□□ -0.09
UPF1-208ENST00000600012 CCDC85BQ15834 202 aaPredicted RBP14.52□□□□□ -0.09
UPF1-208ENST00000600012 USH1GQ495M9 461 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 DEFB128Q7Z7B8 93 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 RETREG2Q8NC44 543 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 GJB4Q9NTQ9 266 aa14.52□□□□□ -0.09
UPF1-208ENST00000600012 PRPF3O43395 683 aaKnown RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 CYTH3O43739 400 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 DEXIO95424 95 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 ZSCAN22P10073 491 aaPredicted RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 MYOGP15173 224 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 AKAP17AQ02040 695 aaKnown RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 BFSP2Q13515 415 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 COPS5Q92905 334 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 TNPO1Q92973 898 aaKnown RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 C8orf76Q96K31 380 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 SLC9A7Q96T83 725 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 UBA5Q9GZZ9 404 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 TSPYL2Q9H2G4 693 aaPredicted RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 NOD1Q9Y239 953 aa14.51□□□□□ -0.09
UPF1-208ENST00000600012 V9GY48 417 aaPredicted RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 PRRC2BQ5JSZ5 2229 aaKnown RBP14.51□□□□□ -0.09
UPF1-208ENST00000600012 ABCB11O95342 1321 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 H3BQV1 296 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 PKN1Q16512 942 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 CDC37Q16543 378 aaPredicted RBP14.5□□□□□ -0.09
UPF1-208ENST00000600012 CCDC62Q6P9F0 684 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 PHOSPHO2Q8TCD6 241 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 ADAMTS19Q8TE59 1207 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 WASF1Q92558 559 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 LZTS2Q9BRK4 669 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 SPZ1Q9BXG8 430 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 CHD7Q9P2D1 2997 aa14.5□□□□□ -0.09
UPF1-208ENST00000600012 ARIH2O95376 493 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 F13A1P00488 732 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 GH1P01241 217 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 CA3P07451 260 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 IQCF3P0C7M6 154 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 FERMT3Q86UX7 667 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 HOMER1Q86YM7 354 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 CCDC155Q8N6L0 562 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 SYTL5Q8TDW5 730 aaPredicted RBP14.49□□□□□ -0.09
UPF1-208ENST00000600012 NSUN6Q8TEA1 469 aaKnown RBP14.49□□□□□ -0.09
UPF1-208ENST00000600012 FTOQ9C0B1 505 aaKnown RBP eCLIP14.49□□□□□ -0.09
UPF1-208ENST00000600012 VAT1LQ9HCJ6 419 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 MYH7BA7E2Y1 1941 aa14.49□□□□□ -0.09
UPF1-208ENST00000600012 TCF20Q9UGU0 1960 aaKnown RBP14.48□□□□□ -0.09
UPF1-208ENST00000600012 MMP3P08254 477 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 PTGISQ16647 500 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 KRT40Q6A162 431 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 MCF2L2Q86YR7 1114 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 ADGRF4Q8IZF3 695 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 MICALL1Q8N3F8 863 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 CAGE1Q8TC20 777 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 AFAP1L1Q8TED9 768 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 PPP1R13LQ8WUF5 828 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 AFG1LQ8WV93 481 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 CHAMP1Q96JM3 812 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 IWS1Q96ST2 819 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 RIOX1Q9H6W3 641 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 VPS54Q9P1Q0 977 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 PTPRSQ13332 1948 aa14.48□□□□□ -0.09
UPF1-208ENST00000600012 KIF28PB7ZC32 967 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 GTPBP6O43824 516 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 BAIAP3O94812 1187 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 SCG2P13521 617 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 POU3F3P20264 500 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 SMARCA1P28370 1054 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 CHMP4BP1P59074 171 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 ARHGAP1Q07960 439 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 RESTQ13127 1097 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 TRIM29Q14134 588 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 STXBP2Q15833 593 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 PFKFB3Q16875 520 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 QRICH1Q2TAL8 776 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 FOXD4L6Q3SYB3 417 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 FOXD4L3Q6VB84 417 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 SEPT14Q6ZU15 432 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 SESTD1Q86VW0 696 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 FBXO18Q8NFZ0 1043 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 TBC1D5Q92609 795 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 GPKOWQ92917 476 aaPredicted RBP eCLIP14.47□□□□□ -0.09
UPF1-208ENST00000600012 TAAR1Q96RJ0 339 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 PIGSQ96S52 555 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 UHRF1Q96T88 793 aaPredicted RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 RMDN3Q96TC7 470 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 COL20A1Q9P218 1284 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 KCNJ14Q9UNX9 436 aa14.47□□□□□ -0.09
UPF1-208ENST00000600012 MRPL11Q9Y3B7 192 aaKnown RBP14.47□□□□□ -0.09
UPF1-208ENST00000600012 MUC3AQ02505 3323 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 PARNO95453 639 aaKnown RBP14.46□□□□□ -0.09
UPF1-208ENST00000600012 PDIA4P13667 645 aaKnown RBP14.46□□□□□ -0.09
UPF1-208ENST00000600012 KCNJ6P48051 423 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 LY6KQ17RY6 165 aa14.46□□□□□ -0.09
UPF1-208ENST00000600012 AAK1Q2M2I8 961 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms