RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 RFC2P35250 354 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 TCTN1Q2MV58 587 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 METTL7BQ6UX53 244 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 CYFIP1Q7L576 1253 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 MAFAQ8NHW3 353 aaPredicted RBP18.35■□□□□ 0.53
LMX1B-204ENST00000561065 AFAP1L1Q8TED9 768 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 NKX2-4Q9H2Z4 354 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 RBM28Q9NW13 759 aaKnown RBP18.35■□□□□ 0.53
LMX1B-204ENST00000561065 SNX14Q9Y5W7 946 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 SLC4A7Q9Y6M7 1214 aa18.35■□□□□ 0.53
LMX1B-204ENST00000561065 GOLGA8AA7E2F4 631 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 GOLGA8BA8MQT2 603 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 CKBP12277 381 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 ITGB5P18084 799 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 PSMA5P28066 241 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 HOXC8P31273 242 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 LRRC8DQ7L1W4 858 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 RETREG2Q8NC44 543 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 GPR20Q99678 358 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 MICAL3Q7RTP6 2002 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 NID2Q14112 1375 aa18.34■□□□□ 0.53
LMX1B-204ENST00000561065 TRANK1O15050 2925 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 COL4A4P53420 1690 aaPredicted RBP18.33■□□□□ 0.53
LMX1B-204ENST00000561065 NBNO60934 754 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 ATP9AO75110 1047 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 SELPP16109 830 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 KCNA2P16389 499 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 ATP2A2P16615 1042 aaKnown RBP18.33■□□□□ 0.53
LMX1B-204ENST00000561065 NEDD9Q14511 834 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 MBTPS1Q14703 1052 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 RAB30Q15771 203 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 XRRA1Q6P2D8 792 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 CCDC155Q8N6L0 562 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 USP38Q8NB14 1042 aa18.33■□□□□ 0.53
LMX1B-204ENST00000561065 JAKMIP1Q96N16 626 aaKnown RBP18.33■□□□□ 0.53
LMX1B-204ENST00000561065 H3BRB1 525 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 STXBP3O00186 592 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 NOP56O00567 594 aaKnown RBP18.32■□□□□ 0.52
LMX1B-204ENST00000561065 SP4Q02446 784 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 APOBRQ0VD83 1088 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 PTK7Q13308 1070 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 PGBD1Q96JS3 809 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 SENP7Q9BQF6 1050 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 PRDM12Q9H4Q4 367 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 TUT1Q9H6E5 874 aaKnown RBP18.32■□□□□ 0.52
LMX1B-204ENST00000561065 PCDHA6Q9UN73 950 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 PCDHA8Q9Y5H6 950 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 UBIAD1Q9Y5Z9 338 aa18.32■□□□□ 0.52
LMX1B-204ENST00000561065 ARHGEF15O94989 841 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 CXCL10P02778 98 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 SMIM10L2AP0DMW4 78 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 SMIM10L2BP0DMW5 78 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 RCAN1P53805 252 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 NAPAP54920 295 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 ADGRE1Q14246 886 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 ZNF618Q5T7W0 954 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 Q6ZUG5 572 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 SERINC5Q86VE9 423 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.31■□□□□ 0.52
LMX1B-204ENST00000561065 GPRASP2Q96D09 838 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 FTOQ9C0B1 505 aaKnown RBP eCLIP18.31■□□□□ 0.52
LMX1B-204ENST00000561065 MSRAQ9UJ68 235 aa18.31■□□□□ 0.52
LMX1B-204ENST00000561065 CUL9Q8IWT3 2517 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 KAT6AQ92794 2004 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 SPDYE3A6NKU9 549 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 ADAMTS3O15072 1205 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 ADD1P35611 737 aaKnown RBP18.3■□□□□ 0.52
LMX1B-204ENST00000561065 PPP1R18Q6NYC8 613 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 NLRX1Q86UT6 975 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 BRF1Q92994 677 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 AGXT2Q9BYV1 514 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 RIC8AQ9NPQ8 531 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 PKD2L1Q9P0L9 805 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 PCDHA11Q9Y5I1 949 aa18.3■□□□□ 0.52
LMX1B-204ENST00000561065 V9GY48 417 aaPredicted RBP18.3■□□□□ 0.52
LMX1B-204ENST00000561065 CCDC196A0A1B0GTZ2 297 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 TREHO43280 583 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 ACTN1P12814 892 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 RPS6KB1P23443 525 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 UTP14CQ5TAP6 766 aaKnown RBP18.29■□□□□ 0.52
LMX1B-204ENST00000561065 BLOC1S2Q6QNY1 142 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 TMCO2Q7Z6W1 182 aaPredicted RBP18.29■□□□□ 0.52
LMX1B-204ENST00000561065 SLC9A7Q96T83 725 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 USP26Q9BXU7 913 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 OSBPL7Q9BZF2 842 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 RNPEPQ9H4A4 650 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 TMEM260Q9NX78 707 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 BARHL2Q9NY43 387 aa18.29■□□□□ 0.52
LMX1B-204ENST00000561065 C17orf102A2RUQ5 167 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 BAIAP3O94812 1187 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 CA3P07451 260 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 CLK2P49760 499 aaKnown RBP18.28■□□□□ 0.52
LMX1B-204ENST00000561065 METAP2P50579 478 aaKnown RBP eCLIP18.28■□□□□ 0.52
LMX1B-204ENST00000561065 WDR5P61964 334 aaKnown RBP18.28■□□□□ 0.52
LMX1B-204ENST00000561065 ADAM17P78536 824 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 DEFB103AP81534 67 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 MTMR1Q13613 665 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 PPP2R2DQ66LE6 453 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 CYP2W1Q8TAV3 490 aa18.28■□□□□ 0.52
LMX1B-204ENST00000561065 ANO3Q9BYT9 981 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms