RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 TSGA10IPQ3SY00 556 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 BRDTQ58F21 947 aaPredicted RBP12.88□□□□□ -0.35
GABPB1-210ENST00000560825 ZNF618Q5T7W0 954 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 KCNB2Q92953 911 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 CCDC136Q96JN2 1154 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 GPR20Q99678 358 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 CERS4Q9HA82 394 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 TMEM260Q9NX78 707 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 CUL9Q8IWT3 2517 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 KAT6AQ92794 2004 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 KLF18A0A0U1RQI7 1052 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 LCHNA4D1U4 455 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 DLL1O00548 723 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 LGALS2P05162 132 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 SMARCA1P28370 1054 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 ICAM3P32942 547 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 KIF5BP33176 963 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 ADD1P35611 737 aaKnown RBP12.88□□□□□ -0.35
GABPB1-210ENST00000560825 DEFB103AP81534 67 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 PCNX4Q63HM2 1172 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 KRT40Q6A162 431 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 DHX32Q7L7V1 743 aaKnown RBP12.88□□□□□ -0.35
GABPB1-210ENST00000560825 HEATR3Q7Z4Q2 680 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.88□□□□□ -0.35
GABPB1-210ENST00000560825 C7orf31Q8N865 590 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 SMARCC2Q8TAQ2 1214 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 UIMC1Q96RL1 719 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 SEZ6LQ9BYH1 1024 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 PSTPIP2Q9H939 334 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 SLC4A7Q9Y6M7 1214 aa12.88□□□□□ -0.35
GABPB1-210ENST00000560825 NLRC5Q86WI3 1866 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 STXBP3O00186 592 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 TREHO43280 583 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 SMIM10L2AP0DMW4 78 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 SMIM10L2BP0DMW5 78 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 KCNA2P16389 499 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 ATP2A2P16615 1042 aaKnown RBP12.87□□□□□ -0.35
GABPB1-210ENST00000560825 HOXC8P31273 242 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 LRRC8DQ7L1W4 858 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 SAMD3Q8N6K7 520 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 LARP6Q9BRS8 491 aaKnown RBP12.87□□□□□ -0.35
GABPB1-210ENST00000560825 COL25A1Q9BXS0 654 aaPredicted RBP12.87□□□□□ -0.35
GABPB1-210ENST00000560825 RNPEPQ9H4A4 650 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 MLXIPQ9HAP2 919 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 SEC63Q9UGP8 760 aaKnown RBP12.87□□□□□ -0.35
GABPB1-210ENST00000560825 NOD1Q9Y239 953 aa12.87□□□□□ -0.35
GABPB1-210ENST00000560825 V9GY48 417 aaPredicted RBP12.87□□□□□ -0.35
GABPB1-210ENST00000560825 C5orf42Q9H799 3197 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 TMEM265A0A087WTH1 108 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 GSTTP1A0A1W2PQM5 241 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 H3BRB1 525 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 PPFIA4O75335 1185 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 CA3P07451 260 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 TGFB3P10600 412 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 HSPA4P34932 840 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 UTP14CQ5TAP6 766 aaKnown RBP12.86□□□□□ -0.35
GABPB1-210ENST00000560825 Q6ZUG5 572 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 RPUSD2Q8IZ73 545 aaKnown RBP12.86□□□□□ -0.35
GABPB1-210ENST00000560825 TMTC2Q8N394 836 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 PPM1EQ8WY54 764 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 JAKMIP1Q96N16 626 aaKnown RBP12.86□□□□□ -0.35
GABPB1-210ENST00000560825 LZTS2Q9BRK4 669 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 FTOQ9C0B1 505 aaKnown RBP eCLIP12.86□□□□□ -0.35
GABPB1-210ENST00000560825 TUT1Q9H6E5 874 aaKnown RBP12.86□□□□□ -0.35
GABPB1-210ENST00000560825 SETD4Q9NVD3 440 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 PCDHA6Q9UN73 950 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 PCDHA8Q9Y5H6 950 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 UBIAD1Q9Y5Z9 338 aa12.86□□□□□ -0.35
GABPB1-210ENST00000560825 GOLGA8AA7E2F4 631 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 GOLGA8BA8MQT2 603 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 ZBTB43O43298 467 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 FIBPO43427 364 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 CALM1P0DP23 149 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 CALM2P0DP24 149 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 CALM3P0DP25 149 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 ARP10275 920 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 SELPP16109 830 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 WDR5P61964 334 aaKnown RBP12.85□□□□□ -0.35
GABPB1-210ENST00000560825 RBL2Q08999 1139 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 CCDC85BQ15834 202 aaPredicted RBP12.85□□□□□ -0.35
GABPB1-210ENST00000560825 RTN1Q16799 776 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 SERINC5Q86VE9 423 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 PCYT2Q99447 389 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 KIAA1671Q9BY89 1806 aa12.85□□□□□ -0.35
GABPB1-210ENST00000560825 COL4A6Q14031 1691 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 CXCL10P02778 98 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 CLK2P49760 499 aaKnown RBP12.84□□□□□ -0.35
GABPB1-210ENST00000560825 GNAQP50148 359 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 ADAM17P78536 824 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 PTK7Q13308 1070 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 MKRN4PQ13434 485 aaPredicted RBP12.84□□□□□ -0.35
GABPB1-210ENST00000560825 BFSP2Q13515 415 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 PKN1Q16512 942 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 RNF20Q5VTR2 975 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 KCNV1Q6PIU1 500 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 METTL7BQ6UX53 244 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.84□□□□□ -0.352e-8■■□□□ 11.7
GABPB1-210ENST00000560825 RUFY4Q6ZNE9 571 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 RETREG2Q8NC44 543 aa12.84□□□□□ -0.35
GABPB1-210ENST00000560825 AFAP1L1Q8TED9 768 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms